Job Description P31550 Confidence 100.00% Date Thu Jan 5 11:48:11 GMT 2012 Rank 7 Aligned Residues 308 % Identity 15% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																						.																							.
Query SS confidence																																						.																							.
Query Sequence		T	A	P	V	F	A	K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	.	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A
Query Conservation																																						.																							.
Alig confidence																			.	.	.	.																.																							.
Template Conservation																			.	.	.	.
Template Sequence		L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	.	.	.	.	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A	M	D	L	Q	V	K	L
Template Known Secondary structure		T	T			T	T										S		.	.	.	.																T	T																							T	T			B		S					S
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.
Predicted Secondary structure																																															.	.																								.	.	.	.	.
Query SS confidence																																															.	.																								.	.	.	.	.
Query Sequence		S	K	T	G	L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	.	.	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	.	.	.	.	.	R	T	S	T	P
Query Conservation																																															.	.																								.	.	.	.	.
Alig confidence																																															.	.																								.	.	.	.	.
Template Conservation
Template Sequence		S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H	G	R	I	A	T	Y	D	I	E	R	S	G
Template Known Secondary structure				T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B										G	G	G		S	S	S					S											T					T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	L	L	L	W	M	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	.	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I	V	L	P	K	D	Y	T	V	V	M
Template Known Secondary structure															T	T											T	T					S											T	T	S		S								.								T	T		T	T							S	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.						.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.																			.	.	.	.
Query SS confidence																																																			.	.	.	.	.																			.	.	.	.
Query Sequence		V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V	A	N	V	T	L	P	A	G	.	.	.	.	.	F	E	K	L	T	K	P	A	T	T	L	E	F	T	P	A	E	V	.	.	.	.	A	A	Q	R
Query Conservation																																																			.	.	.	.	.																			.	.	.	.
Alig confidence																																																			.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M	A	R	Q	L	Q	I	P	A	V	S	P	E	V	A	G	E	N	T	A	N	T	M	Q	A	I	H	G	A	Q	L	R	P	V	P	V	S	P	G	L	M	V	Y	L	D	Q	V	K	R
Template Known Secondary structure									T	T	B	S	S													S											S				B			T	T			S	S	S	B									G	G	G						S	T	T	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		315	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	W	I	S	E	W	Q	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	L	I	E	R	W	N	E	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions