Job Description P31550 Confidence 99.97% Date Thu Jan 5 11:48:11 GMT 2012 Rank 55 Aligned Residues 272 % Identity 13% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.											.
Query SS confidence																														.											.
Query Sequence		V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	.	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K
Query Conservation																														.											.
Alig confidence																														.											.
Template Conservation
Template Sequence		N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	A	P	D	L	A	Q	V	G	Y	A	E	L	P	E	V	F	T	K	G	L	L	Q	D
Template Known Secondary structure													T	T	S															T	T									S	S		G	G	G												T				S						T	T	T							T	T		B
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		99	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	V	.	.	.	.	.	.	.	.	.	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	.	.	.	.	.	.	.	.	.	N	W	R	V	I	Y	Q	D	P	R	T
Query Conservation					.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	Q	Y	A	E	Q	Y	K	N	D	F	A	S	G	P	Y	S	L	V	Q	V	G	G	K	A	Y	G	L	P	Q	D	T	G	P	L	V	Y	F	Y	N	K	A	E	F	E	K	L	G	I	T	E	I	P	Q	T	A	D	E	F	I	A	A	A	K	T	A	A	A	A	G	K	Y	I	M	S	Y	Q	P	D
Template Known Secondary structure										G	G	G	B							T	T			T	T											B													T	T			S				B														T	T		B	S		B			G	G
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	.	.	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		E	A	G	N	M	I	S	G	L	A	G	A	S	G	G	W	Y	K	V	K	G	D	S	W	V	V	N	T	E	T	D	G	S	K	A	T	A	D	F	Y	Q	Q	L	L	D	A	K	A	A	T	T	N	P	R	W	D	P	S	F	D	A	S	I	K	D	G	S	L	I	G	T	V	A	A	A	W	E	A	P	L
Template Known Secondary structure		G	T	T	T								T	T			S					T	T																								T	T		S	B				T	T	S									T	T		B							G	G	G
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		222	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.								240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure										.	.	.											.	.	.	.	.	.	.
Query SS confidence										.	.	.											.	.	.	.	.	.	.
Query Sequence		H	I	L	E	E	K	K	D	.	.	.	N	Y	A	A	A	N	F	S	E	G	.	.	.	.	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V	A	N	V	T	L	P	A
Query Conservation										.	.	.											.	.	.	.	.	.	.
Alig confidence										.	.	.											.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																																															.	.	.
Template Sequence		F	M	T	S	S	G	G	T	G	S	G	E	W	Q	V	A	Q	L	G	D	W	F	G	N	A	G	K	T	G	P	D	G	G	S	A	V	A	V	L	K	N	S	K	H	P	K	E	A	M	E	F	L	D	W	F	N	T	Q	V	P	D	.	.	.	L	V	S	Q	G	L	V	P	A	A	T	T	E	D	A	E
Template Known Secondary structure						T	T	T	T	T	T	T	T								B		S	S		T	T		B		B									B	T	T		S														T					.	.	.				T	T				S	B		S	S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		292	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	S	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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