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Job DescriptionP31550
Confidence58.19%DateThu Jan 5 11:48:11 GMT 2012
Rank113Aligned Residues202
% Identity15%Templatec2ylnA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation
Resolution1.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.. .. .....40.........50.........60.........70.........80..
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Query Sequence  CTAPVFAKPVLTVYTYDSFAA. . . . . DW. . . . GPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGL
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Template Sequence  LIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAG. . . . . LKAGRFDVVANQ
Template Known Secondary structure  T

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   41........50.........60.........70.........80.........90.........100... ......110.....
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  DNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTST
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Template Sequence  VGLTSPERQA. . . . . . . . . . . . . . . . . . . . . . TFDKSEPYSWSGAVLVAHNDSNIKSIADIKG. . . . . . . . . . . . . . . . .
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   116...120..... ....130.........140.........150......
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  PGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYL
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Template Sequence  . . . . . . . VKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEK
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   157..160.........170.........180.........190.........200.........210.........220.........
 
   243......250.........260......
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Query Sequence  QVEVAARTAASKQPELAQKFLQFM
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Template Sequence  VGSGLIVNKG. . NDEAVAKFSTAI
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   230......... 240.........250.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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