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Job DescriptionP31550
Confidence100.00%DateThu Jan 5 11:48:11 GMT 2012
Rank8Aligned Residues300
% Identity14%Templatec2v84A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum
Resolution1.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.........70.........80.........90.........
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Query Sequence  PVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKS
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Template Sequence  DVLYLYNWTYYTP. . . . . TSLIKKFEQQYNVQVVYDDYASNEDMFAKLSI. . . GASGYDLVVPSGDFVSIMKRKHLLEKI
Template Known Secondary structure 
TTTS
.....T
S
SS...S

S
S

BTT


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   100. ........110.........120.........130.........140.........150.........160.........
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Query Sequence  GV. . . . . . . . . . AADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLL
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Template Sequence  DLSKIPNVQFIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKDLAYRMSMMDDMREVMGAALAS
Template Known Secondary structure 
GGG
GGGGGB

TTSTT
SS


TTT

S

SSGGGGG
GGGTTS
S
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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   170.........180........ .190.........200.........210.........220.........230....... ..240...
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Query Sequence  WMQKVYGDDAPQAWQKLAK. . . . . KTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFS. EGHYLQ
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Template Sequence  LGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVY
Template Known Secondary structure  TT

TT


TGGG
SSSTS
S
S
GGGGGG

TTTT
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   159160.........170.........180.........190.........200.........210.........220.........230........
 
   244.....250.........260.........270.........280.........290.........300...... ...310.........320
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Query Sequence  VEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFT. . . PAEVAAQRQAWISE
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Template Sequence  VDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREAAAYQKKTPYYSEHDLERGTLKTDVGAAIEHYNAH
Template Known Secondary structure  BTT
S
TST


SSBTTGGGG

S

SS
GGGGSSS



GGG
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   321......
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Query Sequence  WQRAVSR
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Template Sequence  WNAVRFR
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   319320.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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