Job Description P31550 Confidence 99.97% Date Thu Jan 5 11:48:11 GMT 2012 Rank 56 Aligned Residues 269 % Identity 16% Template c2i58B_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose Resolution 2.80 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.																																		.
Query SS confidence																														.																																		.
Query Sequence		V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	.	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K
Query Conservation																														.																																		.
Alig confidence																														.																											.	.						.
Template Conservation																																																									.	.
Template Sequence		T	V	T	I	E	Y	F	N	Q	K	K	E	M	T	K	T	L	E	E	I	T	R	D	F	E	K	E	N	P	K	I	K	V	K	V	V	N	V	P	N	A	G	E	V	L	K	T	R	V	L	A	G	D	V	P	.	.	D	V	V	N	I	Y	P	Q	S	I	E	L	Q	E	W	A	K	A	G	V	F	E	D
Template Known Secondary structure												G	G	G													T	T		T	T									S	S											T	T				.	.	S						T	T	S									T	T		B
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		99	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.											150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure					.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	V	.	.	.	.	.	.	.	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	.	.	.	.	.	.	.	.	.	.	N	W	R	V	I	Y	Q	D	P	R	T	S
Query Conservation					.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	N	K	D	Y	L	K	R	V	K	N	G	Y	A	E	K	Y	A	V	N	E	K	V	Y	N	V	P	F	T	A	N	A	Y	G	I	Y	Y	N	K	D	K	F	E	E	L	G	L	K	V	P	E	T	W	D	E	F	E	Q	L	V	K	D	I	V	A	K	G	Q	T	P	F	G	I	A	G	A	D	A	W
Template Known Secondary structure			T	T		S	G	G	G	G	B	G	G	G					T		B	T	T	B							B	B																T						B													T	T	T				B				T	T		G	G
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.																									.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	.	.	.	.	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		T	L	N	G	Y	N	Q	L	A	F	A	T	A	T	G	G	G	K	E	A	N	Q	Y	L	R	Y	S	Q	P	N	A	I	K	L	S	D	P	I	M	K	D	D	I	K	V	M	D	I	L	R	I	N	G	S	K	Q	K	N	W	E	G	A	G	Y	T	D	V	I	G	A	F	A	R	G	D	V	L	M	T	P
Template Known Secondary structure		G	G													T	S	S								T	S	S		T	T				T	T												T	T	S	S	S	T	T		B		T	T	G	G	G													T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.								240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence		S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	.	.	.	.	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V	A	N
Query Conservation																												.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	S	W	A	I	T	A	I	N	E	Q	K	P	N	F	K	I	G	T	F	M	I	P	G	K	E	K	G	Q	S	L	T	V	G	A	G	D	L	A	W	S	I	S	A	T	T	K	H	P	K	E	A	N	A	F	V	E	Y	M	T	R	P	E	V	M	Q	K	Y	Y	D	V	D	G	S	P	T	A	I	E
Template Known Secondary structure				G	G	G							T			S	S							B		B	S	S	T	T			B					B	S	S					B	S	S		S													T	S															B		B	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		287	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	K	Q	A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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