Job Description P31550 Confidence 83.62% Date Thu Jan 5 11:48:11 GMT 2012 Rank 104 Aligned Residues 240 % Identity 9% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	F	A	K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	.	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G
Query Conservation																																					.
Alig confidence											.																										.
Template Conservation											.
Template Sequence		A	P	E	V	T	T	A	K	L	.	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V
Template Known Secondary structure				S		S					.				S	S	G	G	G									T	T					T	T		T	T							S													G	G	G	T	S		S						T										T	T
Template Predicted Secondary structure											.
Template SS confidence
		58	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	.	.	.	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M
Query Conservation																																												.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	G	K	P	T	P	M	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L
Template Known Secondary structure		S	S	S						.	.	.	.	.	.	.	.	.	.	.	.								B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.													.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	V	A	A	R	T	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																															.
Template Conservation									.	.	.	.	.	.	.	.																															.
Template Sequence		A	A	G	G	M	E	P	.	.	.	.	.	.	.	.	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	.	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A
Template Known Secondary structure				T	T			B	.	.	.	.	.	.	.	.	T	T	T	B							G	G	G							T	T	S		S						T	.	T									T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																															.
Template SS confidence
		205	.	.	.	.	210	.									.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		252			.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure			.	.													.	.	.	.	.	.	.
Query SS confidence			.	.													.	.	.	.	.	.	.
Query Sequence		A	.	.	S	K	Q	P	E	L	A	Q	K	F	L	Q	.	.	.	.	.	.	.	F	M	V	S	P	A	F	Q	N	A	I	P	T
Query Conservation			.	.													.	.	.	.	.	.	.
Alig confidence			.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q
Template Known Secondary structure																												G	G	G
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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