Phyre 2 alignment of P31550 with c2f5xC

Job Description P31550
Confidence 96.93% Date Thu Jan 5 11:48:11 GMT 2012

Rank 83 Aligned Residues 268

% Identity 13% Template c2f5xC_

PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd

Resolution 1.72 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence	K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	.	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence	E	R	P	V	N	X	V	V	P	F	A	A	G	G	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P	G
Template Known Secondary structure	S	S							S	S		T	T	S																		S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S			S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	.	.	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y
Query Conservation																																																						.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																				.	.	.															.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence	Y	E	P	Y	T	S	F	.	.	.	.	.	.	.	.	.	.	E	P	I	G	L	V	V	D	V	P	X	T	I	I	A	R	G	D	F	.	.	.	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L
Template Known Secondary structure	S		T	T	T	S		.	.	.	.	.	.	.	.	.	.																	T	T		.	.	.	S			S												G	G	G						S		T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
	84	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																		.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.
Template Sequence	G	V	.	.	.	.	.	.	.	.	.	.	N	L	L	T	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G
Template Known Secondary structure	T		.	.	.	.	.	.	.	.	.	.								S	S										T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	151	.											.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence	G	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	.	.	.	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V	A	N	V	T	L	P	A	G	F	E	K	L	T	K	P	A	T	T	L	E	F	T	P	A	E	V	A	A	Q	R	Q
Query Conservation																		.	.	.
Alig confidence																		.	.	.																			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	.	R	X	K	Q	L	G	A	E	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	E	A	N	P	E	A	L	Q	A	K	V	K
Template Known Secondary structure													T	T																									.					T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		S
Template Predicted Secondary structure																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.																		.	270	.	.	.	.	.	.	.	.	.	280	.	.

	316	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	W	I	S	E	W	Q	R	A	V	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	Q	V	P	Q	W	A	E	L	F	K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	283	.	.	.	.	.	.	290	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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