Job Description P31550 Confidence 95.27% Date Thu Jan 5 11:48:11 GMT 2012 Rank 90 Aligned Residues 265 % Identity 11% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																			.																																												.
Query SS confidence																			.																																												.
Query Sequence		K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	.	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	.	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F
Query Conservation																			.																																												.
Alig confidence																			.																																												.
Template Conservation
Template Sequence		S	K	A	I	R	V	I	V	P	F	A	P	G	G	S	T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K	D
Template Known Secondary structure		S	S							S	S		T	T	S																		T	S										G	G	G										S		T	T	S	S											T						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	.	.	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V
Query Conservation																																																									.	.
Alig confidence											.	.	.	.	.	.	.	.	.																				.	.	.																.	.
Template Conservation											.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		L	P	Y	D	P	I	K	D	F	.	.	.	.	.	.	.	.	.	Q	P	V	T	N	F	A	N	T	A	N	V	V	A	V	N	P	K	F	.	.	.	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A
Template Known Secondary structure			S			T	T	T	S		.	.	.	.	.	.	.	.	.																	T	T	S	.	.	.	S		S	S										T	S	T	T	T						S		T	T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	T	.	.	.	.	.	.	.	.	.	.	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P
Template Known Secondary structure			T		.	.	.	.	.	.	.	.	.	.								S	S											T	S	S	S															T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.											.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.																	.	.	.
Query SS confidence		.	.																	.	.	.
Query Sequence		.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	.	.	.	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V	A	N	V	T	L	P	A	G	F	E	K	L	T	K	P	A	T	T	L	E	F	T	P	A	E	V	A	A	Q	R
Query Conservation		.	.																	.	.	.
Alig confidence		.	.																	.	.	.																			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K	V	I	K	.	A	L	D	D	Q	G	S	A	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	P	E	E	F	A	K	E	I
Template Known Secondary structure		G	G												T	T																		T							.						T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.																				.	.	.	.	.	290	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	W	I	S	E	W	Q	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	Q	Y	D	W	A	Q	D	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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