Job Description P31550 Confidence 99.97% Date Thu Jan 5 11:48:11 GMT 2012 Rank 52 Aligned Residues 272 % Identity 12% Template c2b3fD_ PDB info PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose Resolution 1.56 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																														.											.	.																						.	.
Query SS confidence																														.											.	.																						.	.
Query Sequence		V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	.	.	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	.	.	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L
Query Conservation																														.											.	.																						.	.
Alig confidence											.																			.											.	.																						.	.
Template Conservation											.
Template Sequence		K	L	E	I	F	S	W	W	A	.	G	D	E	G	P	A	L	E	A	L	I	R	L	Y	K	Q	K	Y	P	G	V	E	V	I	N	A	T	V	T	G	G	A	G	V	N	A	R	A	V	L	K	T	R	M	L	G	G	D	P	P	D	T	F	Q	V	H	A	G	M	E	L	I	G	T	W	V	V	A	N	R
Template Known Secondary structure								S			.	G	G	G																T	T											G	G	G													T	T				S						T	T					T	T	T	T	T	T	T
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		96	.	.	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150										.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																						.																													.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																						.																													.	.	.	.	.	.	.	.	.
Query Sequence		F	A	K	S	G	V	.	.	.	.	.	.	.	.	.	.	.	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	.	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	.	.	.	.	.	.	.	.	.	W	R	V	I
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																						.																													.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																						.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	D	L	S	A	L	F	R	Q	E	G	W	L	Q	A	F	P	K	G	L	I	D	L	I	S	Y	K	G	G	I	W	S	V	P	V	N	I	H	R	S	N	V	M	W	Y	L	P	A	K	L	K	G	W	G	V	N	P	P	R	T	W	D	K	F	L	A	T	C	Q	T	L	K	Q	K	G	L	E	A	P
Template Known Secondary structure		B											T		T	T	T	S											T	T									B			S														T					S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	.	.	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		L	A	L	G	E	N	W	T	Q	Q	H	L	W	E	S	V	A	L	A	V	L	G	P	D	D	W	N	N	L	W	N	G	K	L	K	F	T	D	P	K	A	V	R	A	W	E	V	F	G	R	V	L	D	C	A	N	K	D	A	A	G	L	S	W	Q	Q	A	V	D	R	V	V	Q	G	K	A	A	F	N	I
Template Known Secondary structure						S																										T	T	S	S		T	T	S															T	T	B		T	T	G	G	G												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		214	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.													.	.	.
Query SS confidence																.	.	.													.	.	.
Query Sequence		S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	.	.	.	K	D	N	Y	A	A	A	N	F	S	E	G	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V	A	N	V
Query Conservation																.	.	.													.	.	.
Alig confidence																.	.	.													.	.	.
Template Conservation
Template Sequence		M	G	D	W	A	A	G	Y	M	T	T	T	L	K	L	K	P	G	T	D	F	A	W	A	P	S	P	G	T	Q	G	V	F	M	M	L	S	D	S	F	G	L	P	K	G	A	K	N	R	Q	N	A	I	N	W	L	R	L	V	G	S	K	E	G	Q	D	T	S	N	P	L	K	G	S	I	A	A	R	L	D
Template Known Secondary structure				T									T	T				B	T	T	T	B						T	T		T	T												B	T	T		T	T												T	S												S		B		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		288	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	A	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	P	S	K	Y
Template Known Secondary structure				G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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