Return to main results Retrieve Phyre Job Id

Job DescriptionP63204
Confidence99.75%DateThu Jan 5 12:07:55 GMT 2012
Rank17Aligned Residues81
% Identity21%Templatec3qp5C_
PDB info PDB header:transcriptionChain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
Resolution3.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110.........120.........130.........140.........150.........160.........170....
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  IKNLLEITYGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIVTLGITSY
Query Conservation     
   
             

 

 


 

  
 





  
 

  

  
   
  

 

   

  
     
Alig confidence 















































































Template Conservation     
                 

 

 


   
 
 
  


  
 

  

  

  
  



 

 



 
 


Template Sequence  VAMLNCLTPHLHQAAIRVANLLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHLA
Template Known Secondary structure 



TTT

T

T
SST
Template Predicted Secondary structure 





















Template SS confidence 















































































   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   175
Predicted Secondary structure 
Query SS confidence 
Query Sequence  F
Query Conservation   
Alig confidence 
Template Conservation 
Template Sequence  M
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   257
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions