Job Description P63204 Confidence 99.52% Date Thu Jan 5 12:07:55 GMT 2012 Rank 59 Aligned Residues 106 % Identity 12% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.
Predicted Secondary structure																						.	.																	.	.																															.								.	.
Query SS confidence																						.	.																	.	.																															.								.	.
Query Sequence		I	F	L	M	T	K	D	S	F	L	L	Q	G	F	W	Q	L	K	D	N	.	.	H	E	M	I	K	I	N	S	L	S	E	I	K	K	V	G	.	.	N	K	P	F	K	V	I	I	D	T	Y	H	N	H	I	L	D	E	E	A	I	K	F	L	E	K	L	D	A	E	.	R	I	I	V	L	A	P	.	.
Query Conservation																						.	.																	.	.																															.								.	.
Alig confidence																						.	.																	.	.																															.								.	.
Template Conservation
Template Sequence		V	L	V	V	D	D	E	E	S	I	T	S	S	L	S	A	I	L	E	E	E	G	Y	H	P	D	T	A	K	T	L	R	E	A	E	K	K	I	K	E	L	F	F	P	V	I	V	L	D	V	W	X	P	D	G	D	G	V	N	F	I	D	F	I	K	E	N	S	P	D	S	V	V	I	V	I	T	G	H	G
Template Known Secondary structure							S															T	T							S	S											S			S						S			T	T			T	T	T										T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
				75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Y	H	I	S	K	L	K	A	K	A	P	I	Y	F	V	S	R	K	E	S	I	K	N	L	L	E	I	T	Y	G	K	H	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		S	V	D	T	A	V	K	A	I	K	K	G	A	Y	E	F	L	E	K	P	F	S	V	E	R	F	L	L	T	I	K	H	A	F	E
Template Known Secondary structure													T							S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions