 |
Job Description | P00892 | Confidence | 96.22% | Date | Thu Jan 5 10:57:00 GMT 2012 |
Rank | 113 | Aligned Residues | 82 |
% Identity | 18% | Template | d1ma3a_ |
SCOP info | DHS-like NAD/FAD-binding domain
| DHS-like NAD/FAD-binding domain
| Sir2 family of transcriptional regulators
|
Resolution | 2.00 |
|
 |
  |   |
237 | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | |
|
. | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | A | D | Y | P | Y | Y | L | G | M | L | G | M | H | G | T | K | A | A | N | F | A | V | Q | E | C | D | L | L | I | A | V | G | A | R | F | D | D | R | V | T | G | K | L | N | T | F | A | P | . |
. |
H | A | S | V | I | H | M | D | I | D | P | A | E | M | N | K | L | R | Q | A | H | V | A | L | Q | G | D | L |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |
| . | . |   |   |   |
|   |   |
|   |
|   |   |
Template Sequence |   |
F | G | E | P | L | P | Q | R | T | . |
. |
. |
. |
. |
. |
. |
L | F | E | A | I | E | E | A | K | H | C | D | A | F | M | V | V | G | S | S | L | V | V | Y | P | A | A | E | L | P | Y | I | A | K | K | A | G | A | K | M | I | I | V | N | A | E | P | T | M | A | D | . |
. |
P | I | F | D | V | K | I | I | G | K | A |
Template Known Secondary structure |   |
B | T | S |
|
|
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |  | S |
|
| S |
| S | T | T | G | G | G |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  | S | S |
|
| T | T | G | . | . | G | G |
| S |  |  |  |  | S |
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
165 | . | . | . | . | 170 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | |
|
. | . | . | . | . | 230 | . | . | . | . | . |
  |
  |   |
315 | . | . | . | . | 320 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | L | L | P | A | L | Q | Q | P | L | N | Q |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|   |   |
Template Sequence |   |
G | E | V | L | P | K | I | V | E | E | V | K | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
236 | . | . | . | 240 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|