Return to main results Retrieve Phyre Job Id

Job DescriptionP00892
Confidence100.00%DateThu Jan 5 10:57:00 GMT 2012
Rank23Aligned Residues492
% Identity18%Templatec3lq1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- PDBTitle: crystal structure of 2-succinyl-6-hydroxy-2,4-cyclohexadiene2 1-carboxylic acid synthase/2-oxoglutarate decarboxylase3 from listeria monocytogenes str. 4b f2365
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30....... ..40.........50.........60.........70.........80
Predicted Secondary structure 










.







Query SS confidence 



































.










































Query Sequence  NGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDG. GVEHLLCRHEQGAAMAAIGYARATGKTGVCIATSGPGATNLIT
Query Conservation 

   
   
   

  


 

     
  

   . 
  
    
  
   
 
 
  

   

  
 


  
 
 
Alig confidence 



































.










































Template Conservation    
 

   
   

  


 

     
  

     
  
   

  

 

 



 

   
   
 


  
   
Template Sequence  DYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFP
Template Known Secondary structure  TT




TTT
SS

SS



SSTT
Template Predicted Secondary structure 





















Template SS confidence 















































































   10.........20.........30.........40.........50.........60.........70.........80.........
 
   81........90.........100.........110.........120.........130......... 140.........150...
Predicted Secondary structure 




















.......




Query SS confidence 


























































. . . . . . .













Query Sequence  GLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMA. . . . . . . EAFDVACSGRPGPV
Query Conservation   
  
     


 
 
       
    
  
         
              
 ....... 
   
     


Alig confidence 


























































.......













Template Conservation 

  
     




 
            
  

  
     
    
            
      
   
     


Template Sequence  AVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPV
Template Known Secondary structure  TT



GGGTTSS
TT



TTTTGGGSS





SSSS


Template Predicted Secondary structure 




























Template SS confidence 















































































   90.........100.........110.........120.........130.........140.........150.........160.........
 
   154.....160.........170.........180.........190.........200.........210.........220.........230. .
Predicted Secondary structure 






































.
Query SS confidence 













































































.
Query Sequence  LVDIPKDIQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTL. K
Query Conservation   
 

 
                         
      
  

 



 
 
     
   
  


    

  
 . 
Alig confidence 
















..




















.









.

























.
Template Conservation   
 

 
          ..                     .     


 
.
     
   
  


 
  

  
   
Template Sequence  HLNFPLREPLVPILEPS. . PFYYTHEVLDDSSIQKMVTEC. TGKKGVFVVG. PIDKKELEQPMVDLAKKLGWPILADPLS
Template Known Secondary structure 

S





SS
..









T.TTS

.S


TT
T


GGG
Template Predicted Secondary structure 












..









.




.








Template SS confidence 















































































   170.........180...... ...190.........200....... ..210....... ..220.........230.........240.....
 
   233......240.........250.........260.........270.........280.........290.........300.........310..
Predicted Secondary structure 
























































Query SS confidence 















































































Query Sequence  GLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQG
Query Conservation   
       
   
  
          
  

 

 

  
                 
 

 
             
  
Alig confidence 















































































Template Conservation               
  
             

 

 

                    
 

               
  
Template Sequence  GLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHC
Template Known Secondary structure  STTSBSS

SS

TTST

SSS

S


SS
TT




TT


S
S
Template Predicted Secondary structure 























































Template SS confidence 















































































   258.260.........270.........280.........290.........300.........310.........320.........330.......
 
   313......320.........330.........340....... ..350.........360.........370......... 380........
Predicted Secondary structure 










...














.


Query SS confidence 


































. . .































.








Query Sequence  DLNALLPALQQPLNQYDWQQHCAQLRDEHSWRYDH. . . PGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQ. MWAAQHIAH
Query Conservation 
    
  
                          ...    
        
        

  
 
   .         
Alig confidence 


































...































.








Template Conservation 
    
  
                                          
   
     
                  
Template Sequence  DERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQI
Template Known Secondary structure 
S
STT

S


TTS
S
SS



Template Predicted Secondary structure 



























Template SS confidence 















































































   338.340.........350.........360.........370.........380.........390.........400.........410.......
 
   389390.........400.........410.........420.........430.........440.........450.........460........
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  TRPENFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLF
Query Conservation    
       
   

     






 
   

 
 




     

 

     

 


 

             
Alig confidence 


























..








































..........
Template Conservation            
   

  
 





 ..  
 

 
 




     

 

    
 
 


 

   ..........
Template Sequence  DKKIKMLANRGANGIDGVVSSALGASV. . VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDEL. . . . . . . . . .
Template Known Secondary structure  SS


SS

SSSTT..TSSSTGGGGTT






..........
Template Predicted Secondary structure 







..














..........
Template SS confidence 















































































   422.......430.........440........ .450.........460.........470.........480.........
 
   469470.........480.........490.........500.........510.........520...
Predicted Secondary structure 
























Query SS confidence 






















































Query Sequence  FQERYSETTLTDNPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVS
Query Conservation                
   

 
 
     
    

  

  
    

 



 
Alig confidence  ..............








































Template Conservation  ..............
    
   
     
    

  

  
    

 




Template Sequence  . . . . . . . . . . . . . . DFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEVK
Template Known Secondary structure  ..............
TTT


STTSSS
Template Predicted Secondary structure  ..............











Template SS confidence 






















































   515....520.........530.........540.........550.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions