Job Description P00892 Confidence 94.77% Date Thu Jan 5 10:57:00 GMT 2012 Rank 120 Aligned Residues 222 % Identity 15% Template c3dufD_ PDB info PDB header:oxidoreductase/transferase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component subunit beta; PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.						.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure															.	.	.									.	.	.	.	.																	.								.
Query SS confidence															.	.	.									.	.	.	.	.																	.								.
Query Sequence		M	N	G	A	Q	W	V	V	H	A	L	R	A	.	.	.	Q	G	V	N	T	V	F	G	.	.	.	.	.	Y	P	G	G	A	I	M	P	V	Y	D	A	L	Y	D	G	.	G	V	E	H	L	L	C	.	R	H	E	Q	G	A	A	M	A	A	I	G	Y	A	R	A	T	G	K	T	G	V	C	I	A	T
Query Conservation															.	.	.									.	.	.	.	.																	.								.
Alig confidence															.	.	.									.	.	.	.	.																	.								.																	.
Template Conservation																																																																								.
Template Sequence		M	T	M	V	Q	A	I	T	D	A	L	R	I	E	L	K	N	D	P	N	V	L	I	F	G	E	D	V	G	V	N	G	G	V	F	R	A	T	E	G	L	Q	A	E	F	G	E	D	R	V	F	D	T	P	L	A	E	S	G	I	G	G	L	A	I	G	L	A	L	Q	.	G	F	R	P	V	P	E	I	Q
Template Known Secondary structure																				T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	.	T								S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																																						.
Query SS confidence																			.	.	.	.	.	.	.	.	.																																						.
Query Sequence		S	G	P	G	A	T	N	L	I	T	G	L	A	D	A	L	L	.	.	.	.	.	.	.	.	.	D	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	D	V	L	G	L	S	L	A	C	T	K	H	.	S	F	L	V	Q	S	L	E	E	L	P	R	I	M	A	E
Query Conservation																			.	.	.	.	.	.	.	.	.																																						.
Alig confidence																			.	.	.	.	.	.	.	.	.														.	.																							.
Template Conservation																																									.	.
Template Sequence		F	F	G	F	V	Y	E	V	M	D	S	I	C	G	Q	M	A	R	I	R	Y	R	T	G	G	R	Y	H	M	P	I	T	I	R	S	P	F	G	G	.	.	G	V	H	T	P	E	L	H	S	D	S	L	E	G	L	V	A	Q	Q	P	G	L	K	V	V	I	P	S	T	P	Y	D	A	K	G	L	L	I	S
Template Known Secondary structure		S	G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													.	.	S	S				T	T	S	S								T	T	S	T	T								S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	D	V	A	C	S	G	R	P	G	P	V	L	V	D	I	P	K	D	I	Q	L	A	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M	L	Y	V	G
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		A	I	R	.	.	.	.	.	D	N	D	P	V	I	F	L	E	H	L	K	L	Y	R	S	F	R	Q	E	V	P	E	G	E	Y	T	I	P	I	G	K	A	D	I	K	R	E	G	K	D	I	T	I	I	A	Y	G	A	M	V	H	E	S	L	K	A	A	A	E	L	E	K	E	G	I	S	A	E	V	V	D
Template Known Secondary structure					.	.	.	.	.	S	S	S								T	T	T	T	T	S							S	S						T	T									S	S							T	T														T	T	T
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	T	V	Q	P	L	D	I	E	T	I	I	G	S	V	E	K	T	G	R	A	I	V	V	Q
Template Known Secondary structure			S				S														S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions