Job Description P00892 Confidence 100.00% Date Thu Jan 5 10:57:00 GMT 2012 Rank 17 Aligned Residues 536 % Identity 16% Template c2x7jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis Resolution 2.35 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		N	G	A	Q	W	V	V	H	A	L	R	A	Q	G	V	N	T	V	F	G	Y	P	G	G	A	I	M	P	V	Y	D	A	L	Y	D	G	.	G	V	E	H	L	L	C	R	H	E	Q	G	A	A	M	A	A	I	G	Y	A	R	A	T	G	K	T	G	V	C	I	A	T	S	G	P	G	A	T	N	L	I	T
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		H	Y	I	G	S	F	I	D	E	F	A	L	S	G	I	T	D	A	V	V	C	P	G	S	R	S	T	P	L	A	V	L	C	A	A	H	P	D	I	S	V	H	V	Q	I	D	E	R	S	A	G	F	F	A	L	G	L	A	K	A	K	Q	R	P	V	L	L	I	C	T	S	G	T	A	A	A	N	F	Y	P
Template Known Secondary structure															T										S	T	T											T	T							S	S																T	S								S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		G	L	A	D	A	L	L	D	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	D	V	L	G	L	S	L	A	C	T	K	H	S	F	L	V	.	.	.	.	.	.	.	Q	S	L	E	E	L	P	R	I	M	A	E	A	F	D	V	A	C	S	G	R	P	G	P	V
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	V	E	A	H	Y	S	R	V	P	I	I	V	L	T	A	D	R	P	H	E	L	R	E	V	G	A	P	Q	A	I	N	Q	H	F	L	F	G	N	F	V	K	F	F	T	D	S	A	L	P	E	E	S	P	Q	M	L	R	Y	I	R	T	L	A	S	R	A	A	G	E	A	Q	K	R	P	M	G	P	V
Template Known Secondary structure										T												G	G	G	S	S	S			T	T					T	T	T	T	G	G	G	S	S											S																				S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.										.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence		L	V	D	I	P	K	D	I	Q	L	A	.	.	.	.	.	.	.	.	.	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M	L	Y	V	G	G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																																																	.
Template Conservation																																																																						.
Template Sequence		H	V	N	V	P	L	R	E	P	L	M	P	D	L	S	D	E	P	F	G	R	M	R	T	G	R	H	V	S	V	K	T	G	T	Q	S	V	D	R	E	S	L	S	D	V	A	E	M	L	A	E	A	E	K	G	M	I	V	C	G	E	L	H	S	D	A	D	K	.	E	N	I	I	A	L	S	K	A	L	Q
Template Known Secondary structure									S						T	T	S		T	T			S	S	S	S		S	S											T	G	G	G											S	S															.											T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		M	P	A	T	C	T	L	K	G	.	L	G	A	V	E	A	D	Y	P	Y	Y	L	G	M	L	G	M	H	G	T	K	A	A	N	F	A	V	Q	E	C	D	L	L	I	A	V	G	A	R	F	D	D	R	V	T	G	K	L	N	T	F	A	P	H	A	S	V	I	H	M	D	I	D	P	A	E	M	N	K	L
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		Y	P	I	L	A	D	P	L	S	N	L	R	N	G	V	H	D	K	S	T	V	I	D	A	Y	D	S	F	L	K	D	D	E	L	K	R	K	L	R	P	D	V	V	I	R	F	G	P	M	P	V	S	K	P	V	F	L	W	L	K	D	D	P	T	I	Q	Q	I	V	I	D	E	D	G	G	W	R	D	P	T
Template Known Secondary structure								G	G	G	T	T	T	B	S	S	S			T	T									T	T	S										S						S	S			S												T	T	S							T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																						.	.
Query SS confidence																									.	.	.	.																						.	.
Query Sequence		R	Q	A	H	V	A	L	Q	G	D	L	N	A	L	L	P	A	L	Q	Q	P	L	N	.	.	.	.	Q	Y	D	W	Q	Q	H	C	A	Q	L	R	D	E	H	S	W	R	Y	D	H	.	.	P	G	D	A	I	Y	A	P	L	L	L	K	Q	L	S	D	R	K	P	A	D	C	V	V	T	T	D	V	G	Q
Query Conservation																									.	.	.	.																						.	.
Alig confidence																									.	.	.	.																						.	.
Template Conservation
Template Sequence		Q	A	S	A	H	M	I	H	C	N	A	S	V	F	A	E	E	I	M	A	G	L	T	A	A	T	R	S	S	E	W	L	E	K	W	Q	F	V	N	G	R	F	R	E	H	L	Q	T	I	S	S	E	D	V	S	F	E	G	N	L	Y	R	I	L	Q	H	L	V	P	E	N	S	S	L	F	V	G	N	S	M
Template Known Secondary structure		S			S					S												T	S		S	S																							T	S					T	T	S												S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		H	Q	M	W	A	A	Q	H	I	A	H	T	R	P	E	.	N	F	I	T	S	S	G	L	G	T	M	G	F	G	L	P	A	A	V	G	A	Q	V	A	R	P	N	D	T	V	V	C	I	S	G	D	G	S	F	M	M	N	V	Q	E	L	G	T	V	K	R	K	Q	L	P	L	K	I	V	L	L	D	N	Q
Query Conservation																	.
Alig confidence																	.																									.
Template Conservation																																										.
Template Sequence		P	I	R	D	V	D	T	F	F	E	K	Q	D	R	P	F	R	I	Y	S	N	R	G	A	N	G	I	D	G	V	V	S	S	A	M	G	V	C	E	G	.	T	K	A	P	V	T	L	V	I	G	D	L	S	F	Y	H	D	L	N	G	L	L	A	A	K	K	L	G	I	P	L	T	V	I	L	V	N	N	D
Template Known Secondary structure													B	S									T	T	T			S	S	S												.		T	S														T	G	G	G	G																		S
Template Predicted Secondary structure																																										.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	L	G	M	V	R	Q	W	Q	Q	L	F	F	Q	E	R	Y	S	E	T	.	T	L	T	D	N	P	D	F	L	M	L	A	S	A	F	G	I	H	G	Q	H	I	T	R	K	D	Q	V	E	A	A	L	D	T	M	L	N	S	D	G	P	Y	L	L	H	V	S	I	D	E	L	E	N	V	W	P	L	V	P
Query Conservation																						.
Alig confidence																						.																																																								.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		G	G	G	I	F	S	F	L	P	Q	A	S	E	K	T	H	F	E	D	L	F	G	T	P	T	G	L	D	F	K	H	A	A	A	L	Y	G	G	T	Y	S	C	P	A	S	W	D	E	F	K	T	A	Y	A	P	Q	A	D	K	P	G	L	H	L	I	E	I	K	T	D	R	Q	S	R	V	Q	.	.	.	.
Template Known Secondary structure		S		G	G	G	G	G	S	G	G	G	S									T	T							T							T	T							S	S													S	S																		.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		536	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	A	S	N	S	E	M	L	E	K
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	H	R	D	M	L	N	E
Template Known Secondary structure		.	.	.
Template Predicted Secondary structure		.	.	.
Template SS confidence
					562	.	.	.	.	.	.	.