Job Description P00892 Confidence 100.00% Date Thu Jan 5 10:57:00 GMT 2012 Rank 18 Aligned Residues 517 % Identity 20% Template c2vbgB_ PDB info PDB header:lyase Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase; PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		M	N	G	A	Q	W	V	V	H	A	L	R	A	Q	G	V	N	T	V	F	G	Y	P	G	G	A	I	M	P	V	Y	D	A	L	Y	D	G	.	G	V	E	H	L	L	C	R	H	E	Q	G	A	A	M	A	A	I	G	Y	A	R	A	T	G	K	T	G	V	C	I	A	T	S	G	P	G	A	T	N	L	I
Query Conservation																																							.
Alig confidence																																							.																							.
Template Conservation																																																														.
Template Sequence		Y	T	V	G	D	Y	L	L	D	R	L	H	E	L	G	I	E	E	I	F	G	V	P	G	D	Y	N	L	Q	F	L	D	Q	I	I	S	R	E	D	M	K	W	I	G	N	A	N	E	L	N	A	S	Y	M	A	D	G	Y	A	R	.	T	K	K	A	A	A	F	L	T	T	F	G	V	G	E	L	S	A	I
Template Known Secondary structure			B												T	T										G	G	G											S	S							S	S														.			S								T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.
Query Sequence		T	G	L	A	D	A	L	L	D	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	.	.	.	.	.	.	.	.	D	V	L	G	L	S	L	A	C	T	K	H	S	F	L	V	Q	S	L	E	E	L	P	R	I	M	A	E	A	F	D	V	A	C	S	G	R	P	G
Query Conservation																																			.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.																		.																				.
Template Conservation																																																												.																				.
Template Sequence		N	G	L	A	G	S	Y	A	E	N	L	P	V	V	E	I	V	G	S	P	T	S	K	V	Q	N	D	G	K	F	V	H	H	T	L	A	D	G	D	F	K	H	F	M	K	M	H	E	P	V	T	A	A	R	T	L	L	T	.	A	E	N	A	T	Y	E	I	D	R	V	L	S	Q	L	L	K	E	R	.	K
Template Known Secondary structure										T	T																	T	T				T	T	S		S	S	S									T	G	G	G		S							.	T	T	T																	.
Template Predicted Secondary structure																																																												.																				.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	V	D	I	P	K	D	I	Q	L	A	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M	L	Y	V	G	G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T	L
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		P	V	Y	I	N	L	P	V	D	V	A	A	A	K	A	E	K	P	A	L	S	L	E	N	T	.	.	.	.	T	E	Q	V	I	L	S	K	I	E	E	S	L	K	N	A	Q	K	P	V	V	I	A	G	H	E	V	I	S	F	G	L	E	K	T	V	T	Q	F	V	S	E	T	K	L	P	I	T	T	L	N
Template Known Secondary structure													T	S	B					S	S						.	.	.	.																	S	S												T	T													T							S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		K	G	L	G	A	V	E	A	D	Y	P	Y	Y	L	G	M	L	.	G	M	H	G	T	K	A	A	N	F	A	V	Q	E	C	D	L	L	I	A	V	G	A	R	F	D	D	R	V	T	G	K	L	N	T	F	A	P	H	A	S	V	I	H	M	D	I	D	P	A	E	M	N	K	L	R	Q	A	H	V	A	L
Query Conservation																			.
Alig confidence																			.																																																													.	.
Template Conservation																																																																																.	.
Template Sequence		F	G	K	S	A	V	D	E	S	L	P	S	F	L	G	I	Y	N	G	K	L	S	E	I	S	L	K	N	F	V	E	S	A	D	F	I	L	M	L	G	V	K	L	T	D	S	S	T	G	A	F	T	H	H	L	D	E	N	K	M	I	S	L	N	I	D	E	G	I	I	F	N	K	V	V	E	D	F	.	.
Template Known Secondary structure		T	T	T	T	S	S		T	T	S	T	T							G	G	G	S												S						S					G	G	G	T	T	T	T						G	G	G						S	S					T	T					S	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	D	L	N	A	L	L	P	A	L	Q	Q	P	L	N	Q	Y	D	W	Q	Q	H	C	A	Q	L	R	D	E	H	S	W	R	Y	D	H	P	G	D	A	I	Y	A	P	L	L	L	K	Q	L	S	D	R	K	P	A	D	C	V	V	T	T	D	V	G	Q	H	Q	M	W	A	A	Q	H	I	A	H	T	R
Query Conservation
Alig confidence		.	.																						.	.	.	.	.	.																																																.
Template Conservation		.	.																						.	.	.	.	.	.																																																.
Template Sequence		.	.	D	F	R	A	V	V	S	S	L	S	E	L	K	G	I	E	Y	E	G	Q	Y	.	.	.	.	.	.	I	D	K	E	E	F	I	P	S	S	A	P	L	S	Q	D	R	L	W	Q	A	V	E	S	L	T	Q	S	N	E	T	I	V	A	E	Q	G	T	S	F	F	G	A	S	T	I	F	.	L	K	S
Template Known Secondary structure		.	.							T	T	G	G	G			S					S			.	.	.	.	.	.										S	S	B																S	S							T	T							T	T	S		.			T
Template Predicted Secondary structure		.	.																						.	.	.	.	.	.																																																.
Template SS confidence
				319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.							340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	N	F	I	T	S	S	G	L	G	T	M	G	F	G	L	P	A	A	V	G	A	Q	V	A	R	P	N	D	T	V	V	C	I	S	G	D	G	S	F	M	M	N	V	Q	E	L	G	T	V	K	R	K	Q	L	P	L	K	I	V	L	L	D	N	Q	R	L	G	M	V	R	Q	W	Q	Q	L	F	F	Q
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		N	S	R	F	I	G	Q	P	L	W	G	S	I	G	Y	T	F	P	A	A	L	G	S	Q	I	A	D	K	E	S	R	H	L	L	F	I	G	D	G	S	L	Q	L	T	V	Q	E	L	G	L	S	I	R	E	K	L	N	P	I	C	F	I	I	N	N	D	G	Y	T	V	E	R	E	I	H	.	.	.	.	.
Template Known Secondary structure		T							T	T	T			T	T	T													T	T	S															G	G	G							T	T										S	S	S								S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.						.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																	.
Query SS confidence																													.	.	.	.	.																	.
Query Sequence		E	R	Y	S	E	T	T	L	T	D	N	P	D	F	L	M	L	A	S	A	F	G	I	H	G	Q	H	.	.	.	.	.	I	T	R	K	D	Q	V	E	A	A	L	D	T	M	L	N	.	S	D	G	P	Y	L	L	H	V	S	I	D	E	L	E	N	V	W	P	L	V	P	P	G	A	S	N	S	E	M	L
Query Conservation																													.	.	.	.	.																	.
Alig confidence																													.	.	.	.	.																	.																					.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.
Template Sequence		G	P	T	Q	S	Y	N	D	I	P	M	W	N	Y	S	K	L	P	E	T	F	G	A	T	E	D	R	V	V	S	K	I	V	R	T	E	N	E	F	V	S	V	M	K	E	A	Q	A	D	V	N	R	M	Y	W	I	E	L	V	L	E	K	E	D	A	P	K	L	L	.	.	.	.	.	.	.	K	K	M	G
Template Known Secondary structure			T	T		G	G	G							G	G	G					T	T			T	T	T								B															T	T	S										T	T							.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.								.	.	.	.
		545	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		540	.	.