Job Description P00892 Confidence 80.70% Date Thu Jan 5 10:57:00 GMT 2012 Rank 143 Aligned Residues 67 % Identity 21% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		186	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure													.																																																																		.	.	.
Query SS confidence													.																																																																		.	.	.
Query Sequence		V	E	Q	A	R	Q	M	L	A	K	A	.	Q	K	P	M	L	Y	V	G	G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T	L	K	G	L	G	A	V	E	A	D	Y	P	Y	Y	L	G	M	L	G	M	H	G	T	K	A	A	N	F	A	V	Q	.	.	.
Query Conservation													.																																																																		.	.	.
Alig confidence													.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	V	N	A	A	L	K	E	A	K
Template Known Secondary structure											T	S	S	S					B						S	S	S		S											T	T							S	S				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																	.	170	.	.	.	.	.	.	.	.	.	180
				262	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	C	D	L	L	I	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		L	K	F	Y	D	V	L	L	V
Template Known Secondary structure			T	T		S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions