Job Description P00892 Confidence 78.69% Date Thu Jan 5 10:57:00 GMT 2012 Rank 147 Aligned Residues 168 % Identity 16% Template c2d6fA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Resolution 3.15 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.								.	.	130	.
Predicted Secondary structure																																																											.	.	.	.	.	.							.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.							.	.	.	.	.	.	.
Query Sequence		G	V	C	I	A	T	S	G	P	G	A	T	N	L	I	T	G	L	A	D	A	L	L	D	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	D	V	L	G	L	S	L	A	C	.	.	.	.	.	.	T	K	H	S	F	L	.	.	.	.	.	.	.	V	Q	S	L
Query Conservation																																																											.	.	.	.	.	.							.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	V	V	A	H	G	T	D	T	M	H	Y	T	S	A	A	L	S	F	M	L	R	T	P	V	P	V	V	F	T	G	A	Q	R	S	S	D	R	P	S	S	D	A	S	L	N	I	Q	C	S	V	R	A	A	T	S	E	I	A	E	V	T	V	C	M	H	A	T	M	D	D	L	S	C	H	L	H	R	G
Template Known Secondary structure									T	T	T															S	S								S	S		T	T	S	T	T		T														S	S			S							S	S	S	S	S	S							G
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180												.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	L	P	R	I	M	A	E	A	F	D	V	A	C	S	G	R	P	G	P	V	L	V	D	I	P	K	D	I	Q	L	A	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	.	.	.	.	.	.	.	.	.	.	.	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	V	R	K	M	H	T	S	R	R	D	T	F	R	S	M	N	A	L	P	L	A	E	V	T	P	D	G	I	K	I	L	E	E	N	Y	R	K	R	G	S	D	E	L	E	L	S	D	R	V	E	E	R	V	A	F	I	K	S	Y	P	G	I	S	P	D	I	I	K	W	H	L	D	E	G	Y	R	G	I
Template Known Secondary structure		G	G					S	S	S		T	T					S	S	S			S					T	T												S	T	T	S																			T	T												T	T		S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		L	Y	V	G	G	G	V	G	M	.	.	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T	L	K	G
Query Conservation											.	.
Alig confidence											.	.														.
Template Conservation																										.
Template Sequence		V	I	E	G	T	G	L	G	H	C	P	D	T	L	I	P	V	I	G	E	A	H	D	M	.	G	V	P	V	A	M	T	S	Q	C
Template Known Secondary structure						B	T	T	T	B			G	G	G										T	.	T								T	T
Template Predicted Secondary structure																										.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions