Job Description P00892 Confidence 59.49% Date Thu Jan 5 10:57:00 GMT 2012 Rank 177 Aligned Residues 168 % Identity 17% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.														.	.	.	.	.	.	130
Predicted Secondary structure																										.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	C	I	A	T	S	G	P	G	A	T	N	L	I	T	G	L	A	D	A	L	L	D	.	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	D	V	L	G	L	S	L	A	C	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	F	L	V	Q	S
Query Conservation																										.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	V	V	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	R	S	S	D	R	P	S	S	D	A	A	X	N	L	I	C	S	V	R	X	A	T	S	E	V	A	E	V	X	V	V	X	H	G	E	T	G	D	T	Y	C	L	A	H	R
Template Known Secondary structure									T	T	T												S	B	T			S								S	S		T	T	S	T	T		S													T	S	S	B		S							S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	E	L	P	R	I	M	A	E	A	F	D	V	A	C	S	G	R	P	G	P	V	L	V	D	I	P	K	D	I	Q	L	A	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	.	.	.	.	.	.	.	.	.	.	.	.	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	K	V	R	K	X	H	T	S	R	R	D	A	F	R	S	I	N	D	V	P	I	A	K	I	W	P	N	G	E	I	E	F	L	R	K	D	Y	R	K	R	S	D	E	E	V	E	V	D	D	K	I	E	E	K	V	A	L	V	K	V	Y	P	G	I	S	S	E	I	I	D	F	L	V	D	K	G	Y	K
Template Known Secondary structure		T	T	S					S	S	S		G	G	G				S	S	S			S					T	T	S					S		S		S		B			S				B																S	S			T									T	T		S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		199	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		P	M	L	Y	V	G	G	G	V	G	M	.	.	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T	L	K	G
Query Conservation													.	.
Alig confidence													.	.														.
Template Conservation																												.
Template Sequence		G	I	V	I	E	G	T	G	L	G	H	T	P	N	D	I	I	P	S	I	E	R	A	V	E	E	.	G	V	A	V	C	X	T	S	Q	C
Template Known Secondary structure								B	T	T	T	B			T	T	T										T	.	T								S	S
Template Predicted Secondary structure																												.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions