Job Description P00892 Confidence 96.50% Date Thu Jan 5 10:57:00 GMT 2012 Rank 108 Aligned Residues 234 % Identity 17% Template c1um9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																	.									.
Query SS confidence																				.	.	.	.																	.									.
Query Sequence		A	Q	W	V	V	H	A	L	R	A	Q	G	V	N	T	V	F	G	.	.	.	.	Y	P	G	G	A	I	M	P	V	Y	D	A	L	Y	D	G	.	G	V	E	H	L	L	C	R	.	H	E	Q	G	A	A	M	A	A	I	G	Y	A	R	A	T	G	K	T	G	V	C	I	A	T	S	G	P	G	A	T	N
Query Conservation																				.	.	.	.																	.									.
Alig confidence																				.	.	.	.																	.									.																.
Template Conservation																																																																	.
Template Sequence		N	R	A	L	D	E	E	M	A	K	D	P	R	V	V	V	L	G	E	D	V	G	K	R	G	G	V	F	L	V	T	E	G	L	L	Q	K	Y	G	P	D	R	V	M	D	T	P	L	S	E	A	A	I	V	G	A	A	L	G	M	A	A	H	.	G	L	R	P	V	A	E	I	Q	F	A	D	Y	I	F	P
Template Known Secondary structure													T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S																.	T								S		G	G	G	G	G	G
Template Predicted Secondary structure																																																																	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.										.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																				.
Query SS confidence											.	.	.	.	.	.	.	.	.																																				.
Query Sequence		L	I	T	G	L	A	D	A	L	.	.	.	.	.	.	.	.	.	L	D	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	D	V	L	G	L	S	L	A	C	.	T	K	H	S	F	L	V	Q	S	L	E	E	L	P	R	I	M	A	E	A	F	D	V	A	C	S
Query Conservation											.	.	.	.	.	.	.	.	.																																				.
Alig confidence											.	.	.	.	.	.	.	.	.															.	.																				.																							.	.	.	.
Template Conservation																																		.	.																																											.	.	.	.
Template Sequence		G	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	V	R	M	P	S	G	G	.	.	G	V	R	G	G	H	H	H	S	Q	S	P	E	A	H	F	V	H	T	A	G	L	K	V	V	A	V	S	T	P	Y	D	A	K	G	L	L	K	A	A	I	R	.	.	.	.
Template Known Secondary structure		G							T	T	T	T					T	T	T	S	S													.	.	S	S				S	S	S	S									T	S	T	T								S														.	.	.	.
Template Predicted Secondary structure																																		.	.																																											.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	P	G	P	V	L	V	D	I	P	K	D	I	Q	L	A	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M	L	Y	V	G	G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A
Query Conservation
Alig confidence		.																																					.	.	.	.	.	.	.	.	.	.																										.
Template Conservation		.																																					.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		.	D	E	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	E	E	D	Y	T	L	P	I	G	K	A	A	L	R	.	.	.	.	.	.	.	.	.	.	R	E	G	K	D	L	T	L	I	C	Y	G	T	V	M	P	E	V	L	Q	A	A	A	E	L	.	A	K	A	G	V	S	A
Template Known Secondary structure		.		S	S								G	G	G	S	S	S							S	S						T	T						.	.	.	.	.	.	.	.	.	.				S	S							G	G	G												.			T	T
Template Predicted Secondary structure		.																																					.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
			164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.											200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	C	T	L	K	G	L	G	A	V	E	A	D	Y	P	Y	Y	L	G	M	L	G	M	H	G	T	K	A	A	N	F	A	V	Q	E	C	D	L	L	I	A	V
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	L	R	T	L	M	P	W	D	Y	E	A	V	M	N	S	V	A	K	T	G	R	V	V	L	V
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.								T														S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.														.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions