Job Description P00892 Confidence 94.65% Date Thu Jan 5 10:57:00 GMT 2012 Rank 121 Aligned Residues 142 % Identity 19% Template c1pt9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue Resolution 2.42 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.										.	250	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M	L	Y	V	G	G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T	L	K	G	L	G	A	V	E	A	D	Y	P	Y	Y	L	G	M	L	.	.	.	.	.	.	.	.	.	G	M	H	G	T	K	A	A
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	N	A	I	D	M	I	R	E	A	N	S	I	I	I	T	P	G	Y	G	L	C	A	A	K	A	Q	Y	P	I	A	D	L	V	K	M	L	T	E	Q	G	K	K	V	R	F	G	I	H	P	V	A	G	R	M	P	G	Q	L	N	V	L	L	A	E	A	G	V	P	Y	D	I	V	L	E	M	D	E	I
Template Known Secondary structure													S													T	T															T	T									T	T		S	S	S	T	T									T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.											.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.									.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		N	F	A	V	Q	E	C	D	L	L	I	A	V	G	A	.	.	.	.	.	.	.	.	.	.	R	F	D	D	R	V	T	G	K	L	N	T	F	A	P	H	A	S	V	I	H	M	D	I	D	P	A	E	M	N	K	.	.	.	.	.	.	.	.	L	R	Q	A	H	V	A	L	Q	G	D	L	N	A	L	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	H	D	F	P	D	T	D	L	V	L	V	I	G	A	N	D	T	V	N	S	A	A	Q	E	D	P	N	S	I	I	A	G	M	P	V	L	E	V	W	K	S	K	Q	V	I	V	M	K	R	S	L	G	V	G	Y	A	A	V	D	N	P	I	F	Y	K	P	N	T	A	M	L	L	G	D	A	K	K	T	C
Template Known Secondary structure		G	G	G	G	G	G		S						S			G	G	G		T						S	S	S	T	T	T	T						G	G	G	S	S							S	S	S				T	T					G	G	G	G	S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		319	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	Q	Q	P	L	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	L	Q	A	K	V	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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