Job Description P00892 Confidence 77.60% Date Thu Jan 5 10:57:00 GMT 2012 Rank 149 Aligned Residues 215 % Identity 19% Template c1ik6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate dehydrogenase; PDBTitle: 3d structure of the e1beta subunit of pyruvate2 dehydrogenase from the archeon pyrobaculum aerophilum Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		A	Q	W	V	V	H	A	L	R	A	Q	G	V	N	T	V	F	G	Y	P	G	G	A	I	M	P	V	Y	D	A	L	Y	D	G	G	V	E	H	L	L	C	R	.	H	E	Q	G	A	A	M	A	A	I	G	Y	A	R	A	T	G	K	T	G	V	C	I	A	T	S	G	P	G	A	T	N	L	I	T	G	L
Query Conservation																																												.
Alig confidence														.	.																		.	.										.																												.	.
Template Conservation														.	.																		.	.																																						.	.
Template Sequence		N	M	A	L	H	E	E	M	E	R	D	E	.	.	R	V	V	V	L	G	E	L	V	T	E	G	L	Y	E	R	F	.	.	G	P	E	R	V	I	D	T	P	L	N	E	G	G	I	L	G	F	A	M	G	M	A	M	A	G	L	K	P	V	A	E	I	Q	F	V	L	.	.	G	A	D	E	L	L	N	H
Template Known Secondary structure													T	.	.	T								T	T	T	T						.	.		T	T	T						S															T	T												.	.
Template Predicted Secondary structure														.	.																		.	.																																						.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	D	A	L	L	D	S	I	P	V	V	A	I	T	G	Q	V	S	A	P	F	I	G	T	D	A	F	Q	E	V	D	V	L	G	L	S	L	A	C	T	K	.	H	S	F	L	V	Q	S	L	E	E	L	P	R	I	M	A	E	A	F	D	V	A	C	S	G	R	P	G	P	V	L	V	D	I	P	K	D	I
Query Conservation																																											.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Sequence		I	A	K	L	R	Y	K	A	P	L	V	V	R	T	P	V	G	S	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	F	V	H	T	P	G	L	V	V	V	M	P	S	T	P	Y	N	A	K	G	L	L	K	A	A	I	R	G	.	.	.	.	.	D	D	P	V	V	F	L	E	P	K	I	L
Template Known Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.					T		T	T								S														S	.	.	.	.	.	S	S								G	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.														.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	S	G	D	L	E	P	W	F	T	T	V	E	N	E	V	T	F	P	H	A	E	V	E	Q	A	R	Q	M	L	A	K	A	Q	K	P	M	L	Y	V	G	G	G	V	G	M	A	Q	A	V	P	A	L	R	E	F	L	A	A	T	K	M	P	A	T	C	T	L	K	G	L	G	A	V	E	A	D	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	A	P	R	E	E	V	P	E	G	D	Y	V	V	E	I	G	K	A	.	.	.	.	.	.	.	.	.	R	V	A	R	E	G	D	D	V	T	L	V	T	Y	G	.	.	.	.	.	A	V	V	H	K	A	L	E	A	A	E	R	V	K	A	S	V	E	V	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S									S	S					T	T			.	.	.	.	.	.	.	.	.							S	S							T	.	.	.	.	.	T											T	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200										.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	Y	L	G	M	L	G	M	H	G	T	K	A	A	N	F	A	V	Q	E	C	D	L	L	I	A	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	V	D	L	Q	T	L	N	P	L	D	F	D	T	V	L	K	S	V	S	K	T	G	R	L	I	I	A
Template Known Secondary structure		.								T	T
Template Predicted Secondary structure		.
Template SS confidence
			235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions