Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	G	L	T	A	T	G	V	T	V	G	I	C	A	G	L	W	Q	L	V	S	S	H	V	G	L	S	Q	G	W	E	L	L	G	T	I	G	F	V	A	F	C	S	F	Y	A	A	G	G	G	K	S	G	F	I	R	S	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?																					?	?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	N	Y	S	G	M	V	W	A	F	F	A	A	L	T	A	G	W	L	A	S	V	S	G	L	S	A	F	W	A	S	V	I	T	T	V	P	F	S	A	V	V	V	W	Q	G	R	F	W	L	L	S	F	I	P	G	G	F	L	G
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Sequence		M	T	L	F	F	A	S	G	M	N	W	T	V	T	L	L	G	F	L	A	G	N	C	V	G	V	I	S	E	Y	G	G	Q	K	L	S	E	A	T	T	K	R	D	G	Y
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1eys chain H domain 2 Region: 157 - 165 Aligned: 9 Modelled: 9 Confidence: 21.4% Identity: 44% Fold: Single transmembrane helix Superfamily: Photosystem II reaction centre subunit H, transmembrane region Family: Photosystem II reaction centre subunit H, transmembrane region Phyre2 PDB 3hd6 chain A Region: 90 - 162 Aligned: 73 Modelled: 73 Confidence: 8.0% Identity: 19% PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Phyre2 1 d1eysh2 2 c3hd6A_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1eysh2 21.4 44 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 2 c3hd6A_ 8.0 19 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0