 |
Job Description | P0ADA3 | Confidence | 81.93% | Date | Thu Jan 5 11:20:26 GMT 2012 |
Rank | 54 | Aligned Residues | 53 |
% Identity | 23% | Template | c2e75C_ |
PDB info |
PDB header:photosynthesis | Chain: C: PDB Molecule:apocytochrome f; |
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
|
Resolution | 3.55 Å |
|
 |
  |   |
294 | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | |
|
|
. | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | |
|
. | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | A | D | G | R | V | V | Y | A | G | N | A | L | R | G | Y | . |
. |
. |
G | N | L | I | I | I | K | H | N | D | D | Y | L | S | A | Y | A | H | N | D | . |
. |
T | M | L | V | R | E | Q | Q | E | V | K | A | G | Q | K | I |
Query Conservation |   |
|   |   |   |
|   |
|   |   |
|
|   |   |   |   |
|   | . | . | . |
|   |   |
|   |
|   |
|   |   |
|   |   |
|   |
|   |
|
|   | . | . |   |   |   |
|   |   |
|   |   |
|   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |
|
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|   |
|
|   |
|
|   |
|   |
|
|
Template Sequence |   |
A | S | A | T | G | T | I | T | K | I | A | K | E | E | D | E | Y | G | N | V | K | Y | Q | V | S | I | Q | T | D | S | G | K | T | V | V | D | T | I | P | A | G | P | E | L | I | V | S | E | G | Q | A | V | K | A | G | E | A | L |
Template Known Secondary structure |   |
| S | S | S |  |  | B |
|
|
|
|
|
|
|
| S | S | S |
|
|
|
|
|
| B | B |
| S | T | T | S |
|
|
| B |
|
|
|
| S | S | S |
|
|
|
|
| S | S |
|  |  |
| T | T |
|
| T |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|