 |
Job Description | P0ADA3 | Confidence | 93.36% | Date | Thu Jan 5 11:20:26 GMT 2012 |
Rank | 21 | Aligned Residues | 52 |
% Identity | 25% | Template | c1q90A_ |
PDB info |
PDB header:photosynthesis | Chain: A: PDB Molecule:apocytochrome f; |
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
|
Resolution | 3.10 Å |
|
  |   |
294 | . | . | . | . | . | 300 | . | . | . | . | |
|
. | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | |
|
. | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | A | D | G | R | V | V | Y | A | G | . |
. |
N | A | L | R | G | Y | G | N | L | I | I | I | K | H | N | D | D | Y | L | S | A | Y | A | H | N | D | . |
. |
T | M | L | V | R | E | Q | Q | E | V | K | A | G | Q | K | I |
Query Conservation |   |
|   |   |   |
|   |
|   |   |
|
| . | . |   |   |   |   |
|   |
|   |   |
|   |
|   |
|   |   |
|   |   |
|   |
|   |
|
|   | . | . |   |   |   |
|   |   |
|   |   |
|   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |
| . |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |
|
|
|
|   |
|
|   |
|
|   |   |
|
|
|
Template Sequence |   |
A | S | A | A | G | K | I | V | A | I | T | A | L | S | E | K | K | G | . |
G | F | E | V | S | I | E | K | A | N | G | E | V | V | V | D | K | I | P | A | G | P | D | L | I | V | K | E | G | Q | T | V | Q | A | D | Q | P | L |
Template Known Secondary structure |   |
| S | S | S |  |  |  |  |  |  |  |  |
|
| T | T | T |
| . |
|  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |
| S | S | S |
| B |
|
|
| T | T |
|  |  |
| T | T |
| B | S |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|