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Job DescriptionP45769
Confidence97.58%DateThu Jan 5 12:03:44 GMT 2012
Rank127Aligned Residues102
% Identity21%Templatec3u5zM_
PDB info PDB header:dna binding protein/dnaChain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  QPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIW
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Template Sequence  KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S



SSS
SSTT
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   41........50.........60.........70.........80.....
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
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Query Sequence  VRKMPKKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GPLTNFASAASFDGRQKVIVIDEFDR. SGLAESQRHLRSFMEAYS
Template Known Secondary structure  ...................................TS

TT


S


.GGGTT
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   86...90.........100.........110. ........120.........
 
   196...200........
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Query Sequence  SGMTMLCVTHEMG
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Template Sequence  SNCSIIITANNID
Template Known Secondary structure  TTS
GG
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   130.........140..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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