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Job DescriptionP45769
Confidence100.00%DateThu Jan 5 12:03:44 GMT 2012
Rank58Aligned Residues220
% Identity24%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50..... ....60.........70.........80.........90.......
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Query Sequence  LKNINLTVQPGERIVLCGPSGSGKSTTI. RCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHF. . . . . . . . .
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Template Sequence  LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDS. . IEGHENIDKMIAIDQSPIGRTPRSNP
Template Known Secondary structure 

SSSS
STTSST








S..
GGG


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TT

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   600.........610.........620.........630.........640.........650. ........660.........670.......
 
   98.100.
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Template Sequence  ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK
Template Known Secondary structure  SSTTSSS

GGGG
TTSTTTB
TTTTTSS

TTS


TTTTTS
B
TTGGG

BT
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   678.680.........690.........700.........710.........720.........730.........740.........750.......
 
   102.......110.. .......120.........130........ .140.........150.........160....... ..170......
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Query Sequence  HLTVLQNCTLA. PIWVRKMPKKEAEDLAVHYLERVRIA. EHAHKFPGQISGGQQQRVAIARSLCMKPK. . . IMLFDEPTS
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Template Sequence  GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV
Template Known Secondary structure  TB
SSBTTT
TTGGGSBTT

STT

TS


SSSTTT
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   758.760.........770.........780.........790.........800.........810.........820.........830.......
 
   177..180.........190.........200.........210.........220 .........230.........240.........250
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Query Sequence  ALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFM. . . . . . DRGEIVEQAAPDEFFAHPKSERTRAFLSQV
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Template Sequence  GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN. ADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS. YTGRFLKNV
Template Known Secondary structure  T

TT



TT.
SSSSGGG

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   838.840.........850.........860.........870... ......880.........890.........900...... ...910.....
 
   251
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Query Sequence  I
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Template Sequence  L
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   916
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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