Job Description P45769 Confidence 100.00% Date Thu Jan 5 12:03:44 GMT 2012 Rank 22 Aligned Residues 238 % Identity 28% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		M	S	Q	I	L	L	Q	P	A	N	A	M	I	T	L	E	N	V	N	K	W	Y	.	.	.	G	Q	F	H	V	L	K	N	I	N	L	T	V	Q	P	G	E	R	I	V	L	C	G	P	S	G	S	G	K	S	T	T	I	R	C	I	N	H	L	E	E	H	Q	Q	G	R	I	V	V	D	G	I	E	L	N
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		T	Q	G	L	K	P	N	M	L	E	G	N	V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K
Template Known Secondary structure							T	T	T															S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T
Template Predicted Secondary structure
Template SS confidence
		1019	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	I	R	N	I	E	R	V	R	Q	E	V	G	M	V	F	Q	H	F	N	L	F	P	H	L	T	V	L	Q	N	C	T	L	A	P	I	W	V	R	K	M	P	K	K	E	A	E	D	L	A	V	H	Y	L	E	R	V	R	I	A	E	H	A	H	K	F	P	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																							.												.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																							.												.	.	.	.	.
Template Sequence		Q	.	.	L	N	V	Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	.	.	.	.	.	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T
Template Known Secondary structure		S	.	.	S						T	T	S						S	S					S	S	.	B						T				S	.	.	.	.	.	S																T						S	S	T	T	T	G	G	G		B		S	T	T	S
Template Predicted Secondary structure			.	.																							.												.	.	.	.	.
Template SS confidence
		1099			1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.						.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	S	G	G	Q	Q	Q	R	V	A	I	A	R	S	L	C	M	K	P	K	I	M	L	F	D	E	P	T	S	A	L	D	P	E	M	V	K	E	V	L	D	T	M	I	G	L	A	Q	S	G	M	T	M	L	C	V	T	H	E	M	G	F	A	R	T	V	A	D	R	V	I	F	M	D	R	G	E	I	V
Query Conservation
Alig confidence																																																		.																		.
Template Conservation																																																		.																		.
Template Sequence		Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	.	E	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K	V	K
Template Known Secondary structure		S	S																			S	S					S		S	S	S																	S	.	S	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																																		.																		.
Template SS confidence
		1171	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.		.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	A	P	D	E	F	F	A	H	P	K	S	E	R	T	R	A	F	L	S	Q
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		E	H	G	T	H	Q	Q	L	L	A	Q	.	K	G	I	Y	F	S	M	V	S	V	Q
Template Known Secondary structure												S	.		S
Template Predicted Secondary structure													.
Template SS confidence
		1249	1250	.	.	.	.	.	.	.	.	.		1260	.	.	.	.	.	.	.	.	.	1270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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