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Job DescriptionP45769
Confidence95.21%DateThu Jan 5 12:03:44 GMT 2012
Rank460Aligned Residues124
% Identity16%Templatec3dm5A_
PDB info PDB header:rna binding protein, transport proteinChain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
Resolution2.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  QPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIW
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Template Sequence  EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   98.100.........110.........120.........130.........140.
 
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Query Sequence  VRKMPKKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQ
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Template Sequence  . . . . . . . GAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK. . SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH
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   142.......150.........160.........170......... 180.........190.........200.........210..
 
   196...200....
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Query Sequence  SGMTMLCVT
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Template Sequence  PHEVILVID
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   213......220.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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