Job Description P45769 Confidence 100.00% Date Thu Jan 5 12:03:44 GMT 2012 Rank 59 Aligned Residues 233 % Identity 24% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		M	S	Q	I	L	L	Q	P	A	N	A	M	I	T	L	E	N	V	N	K	W	Y	G	Q	F	H	V	L	K	N	I	N	L	T	V	Q	P	G	E	R	I	V	L	C	G	P	S	G	S	G	K	S	T	T	I	R	.	.	.	.	.	C	I	N	H	L	E	E	H	Q	Q	G	R	I	V	V	D	G	I	E
Query Conservation																																																										.	.	.	.	.
Alig confidence																					.	.	.	.	.																																	.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		T	E	P	H	T	P	R	E	P	A	G	W	L	E	L	N	G	V	T	.	.	.	.	.	R	N	N	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q
Template Known Secondary structure											S										.	.	.	.	.		T	T											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.						510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	E	D	I	R	N	I	E	R	V	R	Q	E	V	G	M	V	F	Q	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	.	.	.	.	.	.	.	.	.	.	.	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.							S	S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		583	.												.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
																								98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	F	P	H	L	T	V	L	Q	N	C	T	L	A	P	I	W	V	R	.	K	M	P	K	K	E	A	E	D	L	A	V	H	Y	L	E	R	V	R	I	A	.	E	H	A	H	K	F	P	G	Q	I	S	G	G	Q	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.																						.
Template Conservation
Template Sequence		V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A
Template Known Secondary structure										T	T	T	S	S	S		B		T	T	G	G	G			S	S	S								T		B								T	T	T															T		T	T	S	B	T	T			G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.
Predicted Secondary structure																.	.	.																																																						.	.	.	.	.	.
Query SS confidence																.	.	.																																																						.	.	.	.	.	.
Query Sequence		Q	R	V	A	I	A	R	S	L	C	M	K	P	K	.	.	.	I	M	L	F	D	E	P	T	S	A	L	D	P	E	M	V	K	E	V	L	D	T	M	I	G	L	A	Q	S	G	M	T	M	L	C	V	T	H	E	M	G	F	A	R	T	V	A	D	R	V	I	F	M	.	.	.	.	.	.	D	R	G	E
Query Conservation																.	.	.																																																						.	.	.	.	.	.
Alig confidence																.	.	.																																												.										.	.	.	.	.	.
Template Conservation																																																														.
Template Sequence		Q	R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R
Template Known Secondary structure													S	S	S	S									S		S	S																			T	T														.	T	T		S							S	S	S	G	G	G			S
Template Predicted Secondary structure																																																														.
Template SS confidence
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	E	Q	A	A	P	D	E	F	F	A	H	P	K	S	E	R	T	R	A	F	L	S	Q	V	I
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		L	V	A	Q	G	T	P	A	E	V	A	Q	A	A	G	S	.	V	T	A	P	Y	L	R	A	A	L
Template Known Secondary structure							S						T		S	S		.	S	S								T
Template Predicted Secondary structure																		.
Template SS confidence
		816	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.		.	.	.	.	.	.	.	.	840	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions