Job Description P45769 Confidence 95.69% Date Thu Jan 5 12:03:44 GMT 2012 Rank 410 Aligned Residues 131 % Identity 18% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		K	N	I	N	L	T	V	Q	P	G	E	R	I	V	L	C	G	P	S	G	S	G	K	S	T	T	I	R	C	I	N	H	L	E	E	H	Q	Q	G	.	R	I	V	V	D	G	I	E	L	N	E	D	I	R	N	I	E	R	V	R	Q	E	V	G	M	V	F	Q	H	F	N	L	F	P	H	L	T	V	L	Q
Query Conservation																																									.
Alig confidence																																									.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	T	L	A	P	I	W	V	R	K	M	P	K	K	E	A	E	D	L	A	V	H	Y	L	E	R	V	R	I	A	E	H	A	H	K	F	P	G	Q	I	S	G	G	Q	Q	Q	R	V	A	I	A	R	S	L	C	M	K	P	K	I	M	L	F	D	E	P	T	S	A	L	D	P	E	M	V	K	E	V	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	.	.	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S											T	T							S	S				T	T													.	.	T	T		S											S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
																142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	M	I	G	L	A	Q	S	G	M	T	M	L	C	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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