Job Description P75895 Confidence 99.94% Date Thu Jan 5 12:15:46 GMT 2012 Rank 98 Aligned Residues 213 % Identity 14% Template c3fleB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. Resolution 2.01 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																												.				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	P	V	V	V	L	I	S	G	L	G	G	S	G	S	Y	W	L	P	Q	L	A	V	L	E	.	Q	E	Y	.	.	Q	V	V	C	Y	D	Q	R	G	T	G	N	N	P	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	E	D	Y	S	I	A	Q	M	A	A	E	L	H	Q	A
Query Conservation																												.				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	T	A	T	L	F	L	H	G	Y	G	G	S	E	R	S	E	T	F	X	V	K	Q	A	L	N	K	N	V	T	N	E	V	I	T	A	R	V	S	S	E	G	K	V	Y	F	D	K	K	L	S	A	A	N	P	I	V	K	V	E	F	K	D	N	K	N	G	N	F	K	E	N	A	Y	W	I	K	E	V
Template Known Secondary structure												T	T			G	G	G	G										T	T			S									T	T	S					S	S						S								S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		74	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		L	V	A	A	.	.	.	.	G	I	E	H	Y	A	V	V	G	H	A	L	G	A	L	V	G	M	Q	L	A	L	D	Y	P	A	S	V	T	V	L	I	S	V	N	G	W	L	R	I	N	A	H	T	R	R	C	F	Q	V	R	E	R	L	L	Y	S	G	G	A	Q	A	W	V	E	A	Q	P	L	F	L	Y
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	Q	L	K	S	Q	F	G	I	Q	Q	F	N	F	V	G	H	S	X	G	N	X	S	F	A	F	Y	X	K	N	Y	G	D	D	R	H	L	P	Q	L	K	K	E	V	N	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Template Known Secondary structure																				T														T	T		T	T	S										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																															.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		P	A	D	W	M	A	A	R	A	P	R	L	E	A	E	D	A	L	A	L	A	H	F	Q	G	K	N	N	L	L	R	R	L	N	A	L	K	R	A	D	F	S	H	H	A	D	R	I	R	C	P	V	Q	I	I	C	A	S	D	D	L	L	V	P	T	A	C	S	S	E	L	H	A	A	L	P	D	S	Q	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		Y	N	G	I	L	N	X	N	E	N	V	N	E	I	I	V	D	K	Q	G	K	P	S	R	X	N	A	A	Y	R	Q	L	L	S	L	Y	K	I	Y	C	G	K	E	I	E	V	L	N	I	Y	G	D	L	E	D	G	S	H	S	D	G	R	V	S	N	S	S	S	Q	S	L	Q	Y	L	L	R	G	S	T	K
Template Known Secondary structure		T	T			B	T	T	T	B		T	T				B		S	S			B	S	S							T	T	T	T	G	G	G	G	S	T	T	S													S	S	S	S	B	S	S	S	S	B						T							S			S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
							229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	K	M	V	M	P	Y	G	G	H	A	C	N	V	T	D	P	E	T	F	N	A	L	L	L	N	G	L
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																		.
Template Conservation																								.
Template Sequence		S	Y	Q	E	X	K	F	K	G	A	K	A	Q	H	S	Q	L	H	E	N	K	D	.	V	A	N	E	I	I	Q	F	L
Template Known Secondary structure										S	G	G	G	S	T	T	G	G	G	S				.
Template Predicted Secondary structure																								.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions