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Job DescriptionP75895
Confidence99.47%DateThu Jan 5 12:15:46 GMT 2012
Rank188Aligned Residues213
% Identity16%Templatec2bklB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20........ .30...... ...40.........50.. .......60.........70.......
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Query Sequence  PPYADAPVVVLISGLGGSGSY. . WLPQLAVL. EQEYQVVCYDQRGTGN. . . . . . . NPDTLAEDYSIAQMAAELHQALVAA
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Template Sequence  KRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQK
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SS






TT







GGGTT


TTSSTT
TTSGGGTTT
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   441........450.........460.........470.........480.........490.........500.........510.........520
 
   78. 80.........90.........100.........110.........120.........130.........140.........150.....
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Query Sequence  GI. . EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMA
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Template Sequence  YTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYG. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

GGGT
GGG
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TTTGGGSTTGGGG
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   521........530.........540.........550.........560.........570.........
 
   156...160.........170.........180.........190......... 200.........210.........220.......
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Query Sequence  ARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRC. . PVQIICASDDLLVPTACSSELHAALPDS. . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . TAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPAT
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TT
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   580.........590.........600.........610.........620.........630.........640
 
   228.230........ .240.........250.........260
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Query Sequence  . QKMVMPYGGHA. . CNVTDPETFNALLLNGLASLLH
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Template Sequence  ALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLD
Template Known Secondary structure  TT
BTTB
S
TT
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   641........650.........660.........670......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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