Job Description P75895 Confidence 99.73% Date Thu Jan 5 12:15:46 GMT 2012 Rank 150 Aligned Residues 216 % Identity 17% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.						.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure															.	.	.	.											.	.	.	.	.																.														.	.	.	.	.	.	.
Query SS confidence															.	.	.	.											.	.	.	.	.																.														.	.	.	.	.	.	.
Query Sequence		M	K	L	S	L	S	P	P	P	Y	A	D	A	.	.	.	.	P	V	V	V	L	I	S	G	L	G	.	.	.	.	.	G	S	G	S	Y	W	L	P	Q	L	A	V	L	E	Q	.	E	Y	Q	V	V	C	Y	D	Q	R	G	T	G	.	.	.	.	.	.	.	N	N	P	D	T	L	A	E	D	Y	S	I
Query Conservation															.	.	.	.											.	.	.	.	.																.														.	.	.	.	.	.	.
Alig confidence															.	.	.	.											.	.	.	.	.																.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	W	Y	K	M	I	L	P	P	Q	F	D	R	S	K	K	Y	P	L	L	I	Q	V	Y	G	G	P	C	S	Q	S	V	R	S	V	F	A	V	N	W	I	S	Y	L	A	S	K	E	G	M	V	I	A	L	V	D	G	R	G	T	A	F	Q	G	D	K	L	L	Y	A	V	Y	R	K	L	G	V	Y	E	V
Template Known Secondary structure										T	T			S	S	S												T	T	B																		T	T										T	T	B	S	S	S						G	G	G	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		A	Q	M	A	A	E	L	H	Q	A	L	V	A	.	.	A	G	I	E	H	Y	A	V	V	G	H	A	L	G	A	L	V	G	M	Q	L	A	L	D	Y	P	A	S	V	T	V	L	I	S	V	N	G	W	L	R	I	N	A	H	T	R	R	C	F	Q	V	R	E	R	L	L	Y	S	G	G	A	Q	A	W	V
Query Conservation															.	.
Alig confidence															.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	Q	I	T	A	V	R	K	F	I	E	M	G	F	I	D	E	K	R	I	A	I	W	G	W	S	Y	G	G	Y	V	S	S	L	A	L	A	S	G	T	G	L	F	K	C	G	I	A	V	A	P	V	S	S	W	E	Y	Y	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T	S													T											T	T	S	S	S			S						S					T	T	T	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		E	A	Q	P	L	F	L	Y	P	A	D	W	M	A	A	R	A	P	R	L	E	A	E	D	A	L	A	L	A	H	F	Q	G	K	N	N	L	L	R	R	L	N	A	L	K	R	A	D	F	S	H	H	A	D	R	I	R	.	C	P	V	Q	I	I	C	A	S	D	D	L	L	V	P	T	A	C	S	S	E	L
Query Conservation																																																											.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	T	E	R	F	M	G	L	P	T	K	D	D	N	L	E	H	Y	K	N	S	T	V	M	A	R	A	E	Y	F	R	N	V	D	Y	L	L	I	H	G	T	A	D	D	N	V	H	F	Q	N	S	A	Q	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	S	T	T	T	T							T		S	G	G	G	G	G	G	G	T	T	S								T	T		S	S	S		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																											659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
		221	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		H	A	A	L	.	.	.	.	P	D	S	Q	K	M	V	M	P	Y	G	G	H	A	C	N	V	T	D	P	E	T	F	N	A	L	L	L	N	G	L	A	S	L	L	H
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.
Template Conservation
Template Sequence		A	K	A	L	V	N	A	Q	V	D	F	Q	A	M	W	Y	S	D	Q	N	H	G	L	S	G	L	S	T	N	H	L	Y	T	H	M	T	H	F	L	K	Q	C	F	S
Template Known Secondary structure								T	T									T	T			T	T			T
Template Predicted Secondary structure
Template SS confidence
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions