Job Description P75895 Confidence 100.00% Date Thu Jan 5 12:15:46 GMT 2012 Rank 38 Aligned Residues 255 % Identity 17% Template c1wprA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:sigma factor sigb regulation protein rsbq; PDBTitle: crystal structure of rsbq inhibited by pmsf Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																.
Query SS confidence															.																																																.
Query Sequence		M	K	L	S	L	S	P	P	P	Y	A	D	A	.	P	V	V	V	L	I	S	G	L	G	G	S	G	S	Y	W	L	P	Q	L	A	V	L	E	Q	E	Y	Q	V	V	C	Y	D	Q	R	G	T	G	N	N	P	D	T	L	A	E	D	.	Y	S	I	A	Q	M	A	A	E	L	H	Q	A	L	V	A	A	G
Query Conservation															.																																																.
Alig confidence								.	.	.	.				.																																																.
Template Conservation								.	.	.	.
Template Sequence		N	H	V	K	V	K	.	.	.	.	G	S	G	K	A	S	I	M	F	A	P	G	F	G	C	D	Q	S	V	W	N	A	V	A	P	A	F	E	E	D	H	R	V	I	L	F	D	Y	V	G	S	G	H	S	D	L	Y	D	L	N	R	Y	Q	T	L	D	G	Y	A	Q	D	V	L	D	V	C	E	A	L	D
Template Known Secondary structure		T	T					.	.	.	.				S	S								T	T			G	G	G	G	T	T	T	G	G	G	G	T	T	T	S								T	T	T	S	S	S					T	G	G	G	S	S															T	T
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		9	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		I	E	H	Y	A	V	V	G	H	A	L	G	A	L	V	G	M	Q	L	A	L	D	Y	P	A	S	V	T	V	L	I	S	V	N	G	W	L	R	I	N	A	H	T	R	R	C	F	Q	V	R	E	R	L	L	Y	S	G	G	A	Q	A	W	V	E	A	Q	P	L	F	.	.	L	Y	P	A	D	W	M	A	A
Query Conservation																																																																							.	.
Alig confidence																																																																							.	.
Template Conservation
Template Sequence		L	K	E	T	V	F	V	G	H	S	V	G	A	L	I	G	M	L	A	S	I	R	R	P	E	L	F	S	H	L	V	M	V	G	P	S	P	C	Y	L	N	D	P	P	E	Y	Y	G	G	F	E	E	E	Q	L	L	G	L	L	E	M	M	E	K	N	Y	I	G	W	A	T	V	F	A	A	T	V	L	N	Q
Template Known Secondary structure			S								T														G	G	G								S			S	B		B			T	T	T				S	B															T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	P	R	L	E	A	E	D	A	L	A	L	A	H	F	Q	G	K	N	N	L	L	R	R	L	N	A	L	K	R	A	D	F	S	H	H	A	D	R	I	R	C	P	V	Q	I	I	C	A	S	D	D	L	L	V	P	T	A	C	S	S	E	L	H	A	A	L	P	D	S	Q	K	M	V	M	P	Y	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	R	P	E	I	K	E	E	L	E	S	R	F	C	S	T	D	P	V	I	A	R	Q	F	A	K	A	A	F	F	S	D	H	R	E	D	L	S	K	V	T	V	P	S	L	I	L	Q	C	A	D	D	I	I	A	P	A	T	V	G	K	Y	M	H	Q	H	L	P	Y	S	S	L	K	Q	M	E	A	R	G
Template Known Secondary structure		T	T														T	S														T		B						T	T			S									S		S	S	S												S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	C	N	V	T	D	P	E	T	F	N	A	L	L	L	N	G	L	A	S	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	C	P	H	M	S	H	P	D	E	T	I	Q	L	I	G	D	Y	L	K	A	H	V
Template Known Secondary structure		S																					T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions