Job Description P67660 Confidence 99.74% Date Wed Jan 25 15:21:01 GMT 2012 Rank 16 Aligned Residues 202 % Identity 13% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		R	G	W	E	T	H	L	T	I	V	T	E	A	L	V	P	T	P	A	F	F	P	L	I	D	K	L	A	A	.	K	A	N	T	Q	L	A	I	I	T	E	V	L	A	G	A	W	E	R	L	E	Q	G	R	A	D	I	V	I	A	P	D	M	H	F	R	S	S	S	E	I	N	S	R	K	L	Y	T	L	M
Query Conservation																															.
Alig confidence																															.																																			.	.
Template Conservation																																																																		.	.
Template Sequence		Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	.	.	P	V	E	P	L	R	S	E	I	L	G	R	V	G
Template Known Secondary structure			S																T														T	T										G	G	G							T	S			S							S	S	.	.			T	T	S
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		N	V	Y	V	A	A	P	D	H	P	I	H	Q	E	P	E	P	L	S	E	V	T	R	V	K	Y	R	G	I	A	V	A	D	T	A	R	.	E	R	P	V	L	T	V	Q	L	L	D	K	Q	P	R	L	T	V	S	T	I	E	D	K	R	Q	A	L	L	A	G	L	G	V	A	T	M	P	Y	P	M	V	E
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		V	L	C	L	L	S	K	Q	H	P	L	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	L	R	A	Y	H	L	E	A	A	L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L	A	Y
Template Known Secondary structure								T	T	S	G	G	G	S	S										S						S													T	S	S	S										S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																.																.
Query SS confidence																.																.
Query Sequence		K	D	I	A	E	G	R	L	R	V	V	S	P	E	.	S	T	S	E	I	D	I	I	M	A	W	R	R	D	S	.	M	G	E	A	K	S	W	C	L	R	E	I	P	K	L	F	N
Query Conservation																.																.
Alig confidence																.																.
Template Conservation
Template Sequence		L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E	E	C	S
Template Known Secondary structure								T							S	S													G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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