Return to main results Retrieve Phyre Job Id

Job DescriptionP67660
Confidence99.68%DateWed Jan 25 15:21:01 GMT 2012
Rank26Aligned Residues198
% Identity12%Templatec2f7cA_
PDB info PDB header:gene regulationChain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate
Resolution2.16 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.........120. ........130.........140.........150.........160.........170....
Predicted Secondary structure 








.




































Query SS confidence 

























.




















































Query Sequence  ETHLTIVTEALVPTPAFFPLIDKLAA. KANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVY
Query Conservation       
                    .                                                     
Alig confidence 

























.































.



















Template Conservation 
 




         
   
  
    
 
 
 
           
  
  
      .                    
Template Sequence  SQTLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRL. KITDPAIRRIVLHKEQLKLA
Template Known Secondary structure 


GGGGGTT
TTS

TTS
SSS.


BTT
Template Predicted Secondary structure 















.










Template SS confidence 















































































   8990.........100.........110.........120.........130.........140....... ..150.........160.......
 
   175....180.........190.........200....... ..210.........220.........230.........240........
Predicted Secondary structure 
























......















Query SS confidence 
































. . . . . .








































Query Sequence  VAAPDHPIHQEPEPLSEVTRVKYRGIAVADTAR. . . . . . ERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPM
Query Conservation                
                  ......                           
  
 

  

   
Alig confidence 
































......








































Template Conservation                                                                    
  
 

   
   
Template Sequence  IHKHHHPNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAGEGVCIVPASA
Template Known Secondary structure  TTS
TTTS
TT
B
GGGGTTS


SSSSSTTT


S
SSTS
GGG
Template Predicted Secondary structure 








































Template SS confidence 















































































   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   249250.........260.........270.........280.........290.....
Predicted Secondary structure 














Query SS confidence 














































Query Sequence  VEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLF
Query Conservation         
 
              
              
  
    
Alig confidence 












.
































Template Conservation         
   

.          
       

    
   
    
Template Sequence  MDIGVKNLLYIPI. LDDDAYSPISLAVRNMDHSNYIPKILACVQEVF
Template Known Secondary structure  GGSS
SSB.
STT
TT


T
Template Predicted Secondary structure 




.










Template SS confidence 














































   248.250.........260 .........270.........280.........290...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions