 |
Job Description | P67660 | Confidence | 97.35% | Date | Wed Jan 25 15:21:01 GMT 2012 |
Rank | 84 | Aligned Residues | 85 |
% Identity | 25% | Template | c1fx7C_ |
PDB info |
PDB header:signaling protein | Chain: C: PDB Molecule:iron-dependent repressor ider; |
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
|
Resolution | 2.00 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
|
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . |
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | K | E | R | A | L | T | L | E | A | L | R | V | M | D | A | I | D | R | R | G | . |
. |
. |
S | F | A | A | A | A | D | E | L | G | R | V | P | S | A | L | S | Y | T | M | Q | K | L | E | E | E | L | D | V | V | L | F | D | R | . |
S | G | H | R | T | K | F | T | N | V | G | R | M | L | L | E | R | G | R | V |
Query Conservation |   |
|   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |   |
|   |   |   |   | . | . | . |
|   |
|   |
|
|   |   |
|   |
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
| . |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |
|
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|
|   |   |
|   |   |
|   | . | . | . |   |   |
|
|
|   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
Template Sequence |   |
M | N | E | L | V | D | T | T | E | M | Y | L | R | T | I | Y | D | L | E | E | E | G | V | T | P | L | R | A | R | I | A | E | R | L | D | Q | S | G | P | T | V | S | Q | T | V | S | R | M | E | . |
. |
. |
R | D | G | L | L | R | V | A | G | D | R | H | L | E | L | T | E | K | G | R | A | L | A | I | A | V | M | R |
Template Known Secondary structure |   |
|
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
|
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  | T | T | S |  |  |  |
| S | S |
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | E | A | A | D | K | L | T | T | D | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|   |
|
|   |   |   |
Template Sequence |   |
K | H | R | L | A | E | R | L | L | V | D | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|