Job Description P37635 Confidence 4.58% Date Thu Jan 5 11:56:07 GMT 2012 Rank 50 Aligned Residues 75 % Identity 27% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		139	140	.	.	.	.	.	.	.	.	.													150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.										.									.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.										.									.
Query Sequence		K	P	D	K	A	I	I	T	K	I	S	.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	G	I	P	I	T	F	.	S	V	Q	T	M	F	S	D	.	T	N	F	I	A	E	Q	R	A	D	L	P	T	N	I	K	D	I	Q	S	L	Y	Q	K	M	T	K	L	Y	I	E	H	S	E	N	K	N	R
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.										.									.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.										.									.
Template Conservation
Template Sequence		P	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	A	T	G	A	P	I	K	F	I	G	T	G	E	K	I	D	D	I	E	P	F	D	P	P	R	F	V	S	R	L	L	G	L	G	D	I	Q	G	L	L	E	K	F	K	E	L	E	K	E	V	E	I	K	E	E	D
Template Known Secondary structure		T	T									S	S		S	S										T	T										S	S	S	T	T															T	T	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	F	A	G	T	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	R	F	L	R	G	K	F
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions