Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACM2
Confidence95.47%DateThu Jan 5 11:18:30 GMT 2012
Rank82Aligned Residues108
% Identity16%Templated1jgsa_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.... .....40.........50.........60.........70 ........
Predicted Secondary structure 







...........










...


Query SS confidence 





















. . . . . . . . . . .



































. . .







Query Sequence  VNQQIYRILRRDIVHCLIAPGT. . . . . . . . . . . PLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQ. . . RGSYVNKI
Query Conservation 
   
   
   
  
 
 

 ........... 
 
 


   



 





  
   


     ... 
  
   
Alig confidence 





















...........



































...







Template Conservation              
   


  
  

  
          

    
     
  
  
   
 
       


   
 
Template Sequence  VNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKL
Template Known Secondary structure  TTTTS
SSB
T

TTS
TT
SS
Template Predicted Secondary structure 



















Template SS confidence 















































































   21........30.........40.........50.........60.........70.........80.........90.........100
 
   7980.........90.........100.........110.........120
Predicted Secondary structure 



Query SS confidence 









































Query Sequence  SMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQ
Query Conservation                                            
Alig confidence 









































Template Conservation 
  
                      
  

   
   
 

Template Sequence  TTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKV
Template Known Secondary structure 
TTTTTT
TT
Template Predicted Secondary structure 




Template SS confidence 









































   101........110.........120.........130.........140..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions