Job Description P0ACM2 Confidence 32.57% Date Thu Jan 5 11:18:30 GMT 2012 Rank 456 Aligned Residues 86 % Identity 12% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		S	E	K	E	V	S	V	R	F	N	V	S	R	Q	P	V	R	E	A	F	I	K	L	A	E	N	G	L	I	Q	.	.	I	R	P	Q	R	G	S	Y	V	N	K	I	S	M	A	Q	V	R	N	G	S	F	I	R	Q	A	I	E	C	A	V	A	R	R	A	A	S	M	I	T	E	S	Q	C	Y	Q	L	E
Query Conservation																																.	.
Alig confidence																					.	.	.	.								.	.
Template Conservation																					.	.	.	.
Template Sequence		S	V	G	Q	V	A	G	F	A	G	V	T	V	R	T	L	H	H	Y	.	.	.	.	D	D	I	G	L	L	V	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	Q	Q	I	L	F	Y	R	E	L	G	F	P	L	D	E	V	A	A	L	L	D	D	R	A	H	L	R	R	Q	H
Template Known Secondary structure											T										.	.	.	.				T	S	S			S				S	S					B																	T	T											T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	L	H	Q	Q	R	I	A	I	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	L	S	A	R	I	G	K	L	Q	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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