Job Description P0AC47 Confidence 99.97% Date Wed Jan 25 15:20:23 GMT 2012 Rank 9 Aligned Residues 180 % Identity 19% Template c2fugC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																								.											.	.	.	.	.
Query SS confidence																																																								.											.	.	.	.	.
Query Sequence		L	K	I	E	V	V	R	Y	N	P	E	V	D	T	A	P	H	S	A	F	Y	E	V	P	Y	D	A	T	T	S	L	L	D	A	L	G	Y	I	K	D	N	L	A	P	D	L	S	Y	R	W	S	C	R	M	.	A	I	C	G	S	C	G	M	M	V	.	.	.	.	.	N	N	V	P	K	L	A	C	K	T
Query Conservation																																																								.											.	.	.	.	.
Alig confidence							.	.	.				.	.	.	.	.	.	.	.	.	.																						.												.											.	.	.	.	.
Template Conservation							.	.	.				.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		V	R	V	K	V	.	.	.	N	D	R	.	.	.	.	.	.	.	.	.	.	I	V	E	V	P	P	G	T	S	V	M	D	A	V	F	H	A	G	Y	D	V	.	P	L	F	C	S	E	K	H	L	S	P	I	G	A	C	R	M	C	L	V	R	I	G	L	I	Q	W	Q	P	K	L	A	A	S	C	V	T
Template Known Secondary structure							.	.	.	S	S		.	.	.	.	.	.	.	.	.	.						T	T		B									T				.				S			T	T	S				S		S	T	T	S									B		S	S				T	T	T
Template Predicted Secondary structure							.	.	.				.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		2	.	.	.	.				.	.	.											10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.														.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.																.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.																.	.
Query Sequence		F	L	R	D	Y	T	D	G	M	K	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	N	F	P	I	E	R	D	L	V	V	D	M	T	H	F	I	E	S	L	E	A	I	K	P	Y	I	I	G	N	.	.	.	.	.	S	R	T	A	D	Q	G	T	N	I	Q	T	P	A	Q	.	.	M
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.																.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.						.																										.	.	.	.	.																.	.
Template Conservation																																	.
Template Sequence		A	V	A	D	G	M	V	V	D	T	L	S	D	V	V	R	E	A	Q	A	G	M	V	E	F	T	L	L	N	H	P	.	L	D	C	P	T	C	D	K	G	G	A	C	E	L	Q	D	R	T	V	E	Y	G	L	Y	E	K	L	P	V	Y	T	R	F	E	F	T	R	R	H	V	D	K	H	H	P	L	S	P
Template Known Secondary structure		B			T	T					S																			T			.			T	T	T		T	T	G	G	G										T									S					S											S	S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Y	H	Q	F	S	G	C	I	N	C	G	L	C	Y	A	A	C	P	Q	F	G	L	N	P	E	F	I	G	P	A	A	I	T	L	A	H	R	Y	N	E	D	S	R	D	H	G	K	K	E	R	M	A	Q	L	N	S	Q	N	G	V	W	S	C	T	F	V	G	Y	C	S	E	V	C	P	K	H
Query Conservation
Alig confidence																					.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	I	L	D	R	E	R	C	I	H	C	K	R	C	V	R	Y	F	.	.	.	.	.	.	E	E	V	P	G	.	.	.	.	.	.	.	.	.	.	.	D	E	V	L	D	F	I	E	R	G	V	H	T	F	I	G	T	M	D	F	G	L	P	S	G	F	S	G	N	I	T	D	I	C	P	V	G
Template Known Secondary structure		S	S					S													.	.	.	.	.	.			T	T		.	.	.	.	.	.	.	.	.	.	.							B	S		G	G	G		B				S	S	T	T			S	S			T							S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions