Secondary structure and disorder prediction

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Sequence		M	D	I	N	N	K	A	R	I	H	W	A	C	R	R	G	M	R	E	L	D	I	S	I	M	P	F	F	E	H	E	Y	D	S	L	S	D	D	E	K	R	I	F	I	R	L	L	E	C	D	D	P	D	L	F	N	W	L	M	N
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Sequence		H	G	K	P	A	D	A	E	L	E	M	M	V	R	L	I	Q	T	R	N	R	E	R	G	P	V	A	I
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1x6i chain B Region: 1 - 87 Aligned: 87 Modelled: 87 Confidence: 100.0% Identity: 100% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ygfy; PDBTitle: crystal structure of ygfy from escherichia coli Phyre2 PDB 2jr5 chain A Region: 2 - 83 Aligned: 82 Modelled: 82 Confidence: 100.0% Identity: 52% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0350 protein vc_2471; PDBTitle: solution structure of upf0350 protein vc_2471. northeast2 structural genomics target vcr36 Phyre2 PDB 1puz chain A Region: 1 - 78 Aligned: 78 Modelled: 78 Confidence: 99.9% Identity: 32% Fold: YgfY-like Superfamily: YgfY-like Family: YgfY-like Phyre2 PDB 2lm4 chain A Region: 3 - 85 Aligned: 83 Modelled: 83 Confidence: 99.9% Identity: 22% PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a Phyre2 PDB 3erm chain D Region: 17 - 64 Aligned: 48 Modelled: 47 Confidence: 54.7% Identity: 10% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein with unknown function2 from pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 2cqx chain A domain 1 Region: 23 - 61 Aligned: 39 Modelled: 39 Confidence: 43.2% Identity: 8% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1au7 chain A domain 1 Region: 19 - 61 Aligned: 41 Modelled: 43 Confidence: 37.4% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1yrn chain B Region: 23 - 61 Aligned: 39 Modelled: 39 Confidence: 30.9% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 2da4 chain A Region: 23 - 61 Aligned: 39 Modelled: 39 Confidence: 30.1% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 Phyre2 PDB 2dmt chain A Region: 19 - 61 Aligned: 41 Modelled: 43 Confidence: 29.8% Identity: 20% PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 Phyre2 PDB 1xrx chain A domain 1 Region: 51 - 79 Aligned: 29 Modelled: 29 Confidence: 28.3% Identity: 17% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: SeqA N-terminal domain-like Phyre2 PDB 1xrx chain D Region: 51 - 79 Aligned: 29 Modelled: 29 Confidence: 28.3% Identity: 17% PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein Phyre2 PDB 1ddf chain A Region: 24 - 87 Aligned: 61 Modelled: 64 Confidence: 26.7% Identity: 10% Fold: DEATH domain Superfamily: DEATH domain Family: DEATH domain, DD Phyre2 PDB 1x2m chain A domain 1 Region: 23 - 61 Aligned: 39 Modelled: 39 Confidence: 25.3% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1wna chain A domain 1 Region: 42 - 67 Aligned: 26 Modelled: 24 Confidence: 24.7% Identity: 19% Fold: TTHA1528-like Superfamily: TTHA1528-like Family: TTHA1528-like Phyre2 PDB 2dmu chain A Region: 19 - 61 Aligned: 41 Modelled: 43 Confidence: 24.7% Identity: 17% PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid Phyre2 PDB 1ftt chain A Region: 19 - 61 Aligned: 41 Modelled: 43 Confidence: 23.0% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 2e19 chain A Region: 23 - 61 Aligned: 38 Modelled: 39 Confidence: 20.9% Identity: 8% PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 Phyre2 PDB 1x4o chain A domain 1 Region: 62 - 85 Aligned: 24 Modelled: 24 Confidence: 20.1% Identity: 21% Fold: Surp module (SWAP domain) Superfamily: Surp module (SWAP domain) Family: Surp module (SWAP domain) Phyre2 PDB 2e1o chain A domain 1 Region: 19 - 61 Aligned: 41 Modelled: 43 Confidence: 19.4% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 1 c1x6iB_ 2 c2jr5A_ 3 d1puza_ 4 c2lm4A_ 5 c3ermD_ 6 d2cqxa1 7 d1au7a1 8 d1yrnb_ 9 c2da4A_ 10 c2dmtA_ 11 d1xrxa1 12 c1xrxD_ 13 d1ddfa_ 14 d1x2ma1 15 d1wnaa1 16 c2dmuA_ 17 d1ftta_ 18 c2e19A_ 19 d1x4oa1 20 d2e1oa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1x6iB_ 100.0 100 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ygfy; PDBTitle: crystal structure of ygfy from escherichia coli 2 c2jr5A_ 100.0 52 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0350 protein vc_2471; PDBTitle: solution structure of upf0350 protein vc_2471. northeast2 structural genomics target vcr36 3 d1puza_ 99.9 32 Fold:YgfY-like Superfamily:YgfY-like Family:YgfY-like 4 c2lm4A_ 99.9 22 PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a 5 c3ermD_ 54.7 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein with unknown function2 from pseudomonas syringae pv. tomato str. dc3000 6 d2cqxa1 43.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 7 d1au7a1 37.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 8 d1yrnb_ 30.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 9 c2da4A_ 30.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 10 c2dmtA_ 29.8 20 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 11 d1xrxa1 28.3 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 12 c1xrxD_ 28.3 17 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 13 d1ddfa_ 26.7 10 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 14 d1x2ma1 25.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 15 d1wnaa1 24.7 19 Fold:TTHA1528-like Superfamily:TTHA1528-like Family:TTHA1528-like 16 c2dmuA_ 24.7 17 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 17 d1ftta_ 23.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 18 c2e19A_ 20.9 8 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 19 d1x4oa1 20.1 21 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 20 d2e1oa1 19.4 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 21 c2xcjB_ not modelled 19.1 9 PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2 22 d1p7jb_ not modelled 18.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 23 d1ig7a_ not modelled 18.5 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 24 d1b8ia_ not modelled 18.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 25 d2ecba1 not modelled 18.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 26 c3bs3A_ not modelled 17.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 27 c2wl8D_ not modelled 17.7 10 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 28 d1ahdp_ not modelled 17.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 29 d1rh2a_ not modelled 17.3 11 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 30 d1ztra1 not modelled 16.8 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 31 c2da2A_ not modelled 16.7 24 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 32 d1uhsa_ not modelled 16.7 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 33 c2lk2A_ not modelled 16.6 13 PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif1; PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b 34 c2djnA_ not modelled 16.6 20 PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 35 d1ug0a_ not modelled 16.2 27 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 36 c2da3A_ not modelled 16.0 10 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1) 37 d1au1a_ not modelled 15.8 11 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 38 d1fjla_ not modelled 15.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 39 c2da1A_ not modelled 15.4 13 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 40 c3gxvA_ not modelled 15.4 9 PDB header:hydrolase/replication Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase 41 c2l9rA_ not modelled 14.9 20 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 42 d1p7ia_ not modelled 14.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 43 d1jgga_ not modelled 14.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 44 d1x2na1 not modelled 14.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 c3omtA_ not modelled 14.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 46 d1fkma2 not modelled 13.5 17 Fold:Left-handed superhelix Superfamily:Ypt/Rab-GAP domain of gyp1p Family:Ypt/Rab-GAP domain of gyp1p 47 d1fjlb_ not modelled 13.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 48 d2r5yb1 not modelled 13.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 49 d1dzfa1 not modelled 13.3 28 Fold:Restriction endonuclease-like Superfamily:Eukaryotic RPB5 N-terminal domain Family:Eukaryotic RPB5 N-terminal domain 50 d2r1jl1 not modelled 13.1 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 51 d2hddb_ not modelled 12.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 52 c3nauA_ not modelled 12.1 15 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2) 53 d2icta1 not modelled 12.1 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 54 d1lfup_ not modelled 12.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 55 d1x57a1 not modelled 12.1 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:EDF1-like 56 d1y7ya1 not modelled 11.9 5 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 57 c3ocmB_ not modelled 11.7 10 PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 58 d1k61a_ not modelled 11.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 59 c2dmnA_ not modelled 10.6 14 PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif2lx; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx 60 d1gt0c1 not modelled 10.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 61 d2d6fc2 not modelled 10.3 14 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 62 c2da5A_ not modelled 10.3 13 PDB header:dna binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein) 63 c3f52A_ not modelled 10.2 8 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 64 d1le8b_ not modelled 9.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 d1zq1c2 not modelled 9.6 18 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 66 c3oq9C_ not modelled 9.3 12 PDB header:apoptosis Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6; PDBTitle: structure of the fas/fadd death domain assembly 67 c2da7A_ not modelled 9.2 8 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger homeobox protein 1b; PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1) 68 d1le8a_ not modelled 8.9 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 69 d1bw5a_ not modelled 8.7 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 70 c2ef8A_ not modelled 8.5 11 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcription factor; PDBTitle: crystal structure of c.ecot38is 71 d1hdpa_ not modelled 8.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 72 c1jqsB_ not modelled 8.3 8 PDB header:ribosome Chain: B: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 73 d1adra_ not modelled 8.2 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 74 d1octc1 not modelled 8.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 75 c3fwcO_ not modelled 8.1 17 PDB header:cell cycle, transcription Chain: O: PDB Molecule:protein sus1; PDBTitle: sac3:sus1:cdc31 complex 76 c3a4cA_ not modelled 8.0 17 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 77 c2k40A_ not modelled 7.8 15 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox expressed in es cells 1; PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l 78 c1s7eA_ not modelled 7.8 17 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 6; PDBTitle: solution structure of hnf-6 79 d1ocpa_ not modelled 7.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 80 d1ys7a1 not modelled 7.5 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 81 d1llib_ not modelled 7.5 3 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 82 c2dmsA_ not modelled 7.4 15 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 83 d1utxa_ not modelled 7.3 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 84 d2ecca1 not modelled 7.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 85 c2k0sA_ not modelled 7.3 20 PDB header:structural protein Chain: A: PDB Molecule:adp-ribosylation factor-like protein 2-binding PDBTitle: solution nmr structure of protein bc066483 86 d2cuea1 not modelled 7.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 87 c3tgnA_ not modelled 7.1 16 PDB header:transcription Chain: A: PDB Molecule:adc operon repressor adcr; PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state 88 c3jw4C_ not modelled 7.1 19 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family; PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum 89 c3qwlA_ not modelled 7.1 15 PDB header:hydrolase activator Chain: A: PDB Molecule:tbc1 domain family member 7; PDBTitle: crystal structure of human tbc1 domain family member 7 90 d1fexa_ not modelled 7.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 91 d2fq4a2 not modelled 7.0 16 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 92 c3fmtF_ not modelled 7.0 18 PDB header:replication inhibitor/dna Chain: F: PDB Molecule:protein seqa; PDBTitle: crystal structure of seqa bound to dna 93 d2croa_ not modelled 6.9 6 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 94 c2e8nA_ not modelled 6.9 7 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1) 95 c3a01A_ not modelled 6.9 22 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeodomain-containing protein; PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna 96 d1pufb_ not modelled 6.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 c3ecoB_ not modelled 6.8 13 PDB header:transcription Chain: B: PDB Molecule:mepr; PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa 98 c2k6oA_ not modelled 6.8 19 PDB header:antimicrobial protein Chain: A: PDB Molecule:cathelicidin antimicrobial peptide; PDBTitle: human ll-37 structure 99 d1vhqa_ not modelled 6.7 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0