Email l.a.kelley@imperial.ac.uk Description P39267 Date Thu Jan 5 11:58:39 GMT 2012 Unique Job ID c5365afec9e12536

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ku8A_ 50.0 13 PDB header:toxin/isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: ccdbvfi:gyra14ec 2 c3jzaB_ 49.8 25 PDB header:transport protein Chain: B: PDB Molecule:uncharacterized protein drra; PDBTitle: crystal structure of human rab1b in complex with the gef domain of2 drra/sidm from legionella pneumophila 3 d1vmaa1 48.5 15 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 4 d1x75a1 48.2 13 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 5 c3n6oB_ 48.2 23 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide exchange factor; PDBTitle: crystal structure of the gef and p4m domain of drra/sidm from2 legionella pneumophila 6 d1n9pa_ 42.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 7 c3iz6T_ 37.7 58 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 8 c2xznZ_ 34.5 21 PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 9 c3l0mA_ 30.0 23 PDB header:protein binding Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of rab1-activation domain and p4m domain of2 sidm/drra from legionella 10 c3izbT_ 29.5 57 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein rps21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 11 d1bazb_ 28.5 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 12 d2pgda1 28.1 21 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 13 c1jekA_ 27.8 15 PDB header:viral protein Chain: A: PDB Molecule:env polyprotein; PDBTitle: visna tm core structure 14 c1z3xA_ 27.1 11 PDB header:transferase activator Chain: A: PDB Molecule:putative cytidyltransferase; PDBTitle: structure of gun4 from thermosynechococcus elongatus 15 c3euhB_ 25.7 13 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex 16 d1hhsa_ 24.9 28 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:dsRNA phage RNA-dependent RNA-polymerase 17 c3p8cD_ 24.1 12 PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex 18 c3l0iA_ 23.1 19 PDB header:protein binding/protein transport Chain: A: PDB Molecule:drra; PDBTitle: complex structure of sidm/drra with the wild type rab1 19 c2k37A_ 23.0 28 PDB header:photosynthesis Chain: A: PDB Molecule:chlorosome protein a; PDBTitle: csma 20 d1myka_ 22.6 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 21 d1baza_ not modelled 22.5 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 22 c3tbiA_ not modelled 21.9 16 PDB header:transcription Chain: A: PDB Molecule:rna polymerase-associated protein gp33; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain 23 d1bdta_ not modelled 19.7 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 24 c2e4fA_ not modelled 18.7 27 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 25 d1i6za_ not modelled 17.9 22 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 26 d2crna1 not modelled 16.6 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 27 d1gaka_ not modelled 15.8 27 Fold:Fertilization protein Superfamily:Fertilization protein Family:Fertilization protein 28 d1u9pa1 not modelled 15.4 13 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 29 c2xi7B_ not modelled 14.9 23 PDB header:transferase Chain: B: PDB Molecule:rna polymerase l; PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein 30 c2xi5D_ not modelled 14.7 23 PDB header:transferase Chain: D: PDB Molecule:rna polymerase l; PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein 31 c1wncE_ not modelled 14.2 20 PDB header:viral protein Chain: E: PDB Molecule:e2 glycoprotein; PDBTitle: crystal structure of the sars-cov spike protein fusion core 32 d1pgja1 not modelled 13.3 13 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 33 c3hfeC_ not modelled 12.6 25 PDB header:transport protein Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1; PDBTitle: a trimeric form of the kv7.1 a domain tail 34 d1z3xa2 not modelled 12.5 11 Fold:GUN4-like Superfamily:GUN4-like Family:GUN4-like 35 d2id1a1 not modelled 12.2 18 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 36 c2vkzH_ not modelled 11.8 15 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 37 d1m50a_ not modelled 11.5 35 Fold:Bacteriochlorophyll A protein Superfamily:Bacteriochlorophyll A protein Family:Bacteriochlorophyll A protein 38 c2kz3A_ not modelled 11.3 29 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 39 d1mylb_ not modelled 10.8 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 40 c1qgbA_ not modelled 10.3 10 PDB header:cell adhesion Chain: A: PDB Molecule:protein (fibronectin); PDBTitle: solution structure of the n-terminal f1 module pair from2 human fibronectin 41 c1y6iA_ not modelled 10.1 8 PDB header:ligand binding protein Chain: A: PDB Molecule:mg-chelatase cofactor gun4; PDBTitle: synechocystis gun4 42 c2ieqC_ not modelled 9.6 17 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 43 c2xsbA_ not modelled 9.5 17 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: ogoga pugnac complex 44 d1iiea_ not modelled 9.5 25 Fold:Class II MHC-associated invariant chain ectoplasmic trimerization domain Superfamily:Class II MHC-associated invariant chain ectoplasmic trimerization domain Family:Class II MHC-associated invariant chain ectoplasmic trimerization domain 45 d1y6ia2 not modelled 8.9 8 Fold:GUN4-like Superfamily:GUN4-like Family:GUN4-like 46 c3bj4B_ not modelled 8.8 25 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 47 c2crnA_ not modelled 8.8 11 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 48 c2gr7C_ not modelled 8.7 11 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 49 d2gr7a1 not modelled 8.7 11 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 50 d2cpwa1 not modelled 8.6 4 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 c2kfeA_ not modelled 8.2 14 PDB header:antimicrobial protein Chain: A: PDB Molecule:meucin-24; PDBTitle: solution structure of meucin-24 52 c2kppA_ not modelled 8.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0431 protein; PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112 53 d2veaa3 not modelled 7.6 31 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:BphP N-terminal domain-like 54 d1a8ra_ not modelled 7.5 40 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 55 c3ejhB_ not modelled 7.5 11 PDB header:cell adhesion Chain: B: PDB Molecule:fibronectin; PDBTitle: crystal structure of the fibronectin 8-9fni domain pair in complex2 with a type-i collagen peptide 56 d3cx5h1 not modelled 7.4 50 Fold:Single transmembrane helix Superfamily:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 57 c3swfA_ not modelled 7.4 11 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 58 c3upsA_ not modelled 7.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis 59 c2cpwA_ not modelled 7.2 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 60 c2rkzD_ not modelled 6.9 14 PDB header:cell adhesion Chain: D: PDB Molecule:fibronectin; PDBTitle: crystal structure of the second and third fibronectin f12 modules in complex with a fragment of staphylococcus3 aureus fnbpa-1 61 d1czan4 not modelled 6.9 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 62 d1o57a1 not modelled 6.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 63 c3mmyF_ not modelled 6.8 56 PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 64 d1epua_ not modelled 6.6 9 Fold:Sec1/munc18-like (SM) proteins Superfamily:Sec1/munc18-like (SM) proteins Family:Sec1/munc18-like (SM) proteins 65 c2dd4H_ not modelled 6.5 16 PDB header:hydrolase Chain: H: PDB Molecule:thiocyanate hydrolase beta subunit; PDBTitle: thiocyanate hydrolase (scnase) from thiobacillus thioparus2 recombinant apo-enzyme 66 c2dagA_ not modelled 6.4 11 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 67 c3iwfA_ not modelled 6.3 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 68 d1txka1 not modelled 6.3 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 69 d2oo3a1 not modelled 6.1 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:LPG1296-like 70 d3bqoa1 not modelled 6.0 21 Fold:Telomeric repeat binding factor (TRF) dimerisation domain Superfamily:Telomeric repeat binding factor (TRF) dimerisation domain Family:Telomeric repeat binding factor (TRF) dimerisation domain 71 d1whca_ not modelled 5.9 7 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 72 d1dn1a_ not modelled 5.7 18 Fold:Sec1/munc18-like (SM) proteins Superfamily:Sec1/munc18-like (SM) proteins Family:Sec1/munc18-like (SM) proteins 73 d1bg3a4 not modelled 5.6 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 74 c2y9xC_ not modelled 5.5 13 PDB header:oxidoreductase Chain: C: PDB Molecule:polyphenol oxidase; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 75 c1aq5C_ not modelled 5.1 19 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures