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Job DescriptionQ46806
Confidence100.00%DateThu Jan 5 12:34:31 GMT 2012
Rank34Aligned Residues355
% Identity15%Templatec3gnhA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:l-lysine, l-arginine carboxypeptidase cc2672; PDBTitle: crystal structure of l-lysine, l-arginine carboxypeptidase cc2672 from2 caulobacter crescentus cb15 complexed with n-methyl phosphonate3 derivative of l-arginine.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10..... ....20.........30...... ...40.........50.........60.........70.....
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Query Sequence  VLIKNGTVVNADG. . . QAKQDLLIESGIVRQLGNNIS. PQLPYEEIDATGCYVFPGGVDVHTHFNIDVGIARSCDDF. . .
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Template Sequence  KAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEYSD
Template Known Secondary structure  TTTTSTTTTS


TT


TT

TT

SGGGGGS
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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   76...80.........90.........100.........110.........120....... ..
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Query Sequence  . . . . . . . FTGTRAAACGGTTTIIDHMGFGPNGCRLRHQLEVYRGYAAHKAVIDYSFHGV. . . . . . . . . . . . . . . . . . . IQ
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Template Sequence  RFWSVVQTANAKKTLEAGFTTVRNVGAADYDDVGLREAIDAGYVPGPRIVTAAISFGATGGHCDSTFFPPSMDQKNPFNS
Template Known Secondary structure  TT


STTTTSS




S

BSTTSTTS

SS
GGG



TT

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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   130.........140.........150.... .....160.........170.........180.........190.........200
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Query Sequence  HINHAILDEIPMIVEEGLSSFKLYL. . . . . . . . . TYQYKLNDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAG
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Template Sequence  DSPDEARKAVRTLKKYGAQVIICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVR. . . . . .
Template Known Secondary structure 
STT
SB

B
B

SSSSS

TT
B
S
TT
B

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   190.........200.........210.........220.........230.........240.........250.........260...
 
   201........210.........220.........230.........240.........250.........260.........270.........280
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Query Sequence  LTAPRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYDTEDG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AGVDTIEHASLVDDEGIKLAVQKGAYFSMDIYNTDYTQAEGKKNG. VL
Template Known Secondary structure  ................................TT
S
TT

T



STT.

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   265....270.........280.........290.........300......... 310.
 
   281........290.........300.........310.........320.........330.........340.........350.........360
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Query Sequence  MKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMTGRITPE
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Template Sequence  EDNLRKDRDIGELQRENFRKALKAGVKMVYGTDAGIYPHGDNAKQF. . . . . . . . . . . . . . . . . . . . . . . AVMVRYGATPL
Template Known Secondary structure  T




BTTB
TT
GGG.......................TT

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   312.......320.........330.........340.........350....... ..360........
 
   361........370.........380.........390.........400.........410.........420.........430......
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Query Sequence  RFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIF
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Template Sequence  QAIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVAGD. . . . . . . . . . . . . . . . . PLADVTTLEKPVFVMKGGAVVK
Template Known Secondary structure  TTT
TTTSSS

TTSB

SS
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GGGGGS
STT
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   369370.........380.........390.........400..... ....410.........420.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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