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Job DescriptionQ46806
Confidence100.00%DateThu Jan 5 12:34:31 GMT 2012
Rank22Aligned Residues391
% Identity23%Templatec3gipB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:n-acyl-d-glutamate deacylase; PDBTitle: crystal structure of n-acyl-d-glutamate deacylase from2 bordetella bronchiseptica complexed with zinc, acetate and3 formate ions.
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10..... ....20.........30.........40.........50.........60.........70........
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Query Sequence  MRVLIKNGTVVNADG. . QAKQDLLIESGIVRQLGNNISPQLPYEEIDATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTG
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Template Sequence  LDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHP. ARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLR. . . . .
Template Known Secondary structure  BSSS

SSS



TT

SSS
.BSS
TTS
SS


TT
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   7..10.........20.........30.........40...... ...50.........60.........70.........80
 
   7980.........90..... ....100.........110.........120 ....
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Query Sequence  TRAAACGGTTTIIDHMG. . . . . . . . . . . . . . . . . . . . . . . . FGPNGCRLRHQLEVYRGYAAHKAVI. . . . . . . . . . DYSF
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Template Sequence  . . WKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQ
Template Known Secondary structure  ..TTT

TT

S
S


TT


GGGGGT
SS


SSS

SS
SSTT
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   81........90.........100.........110.........120.........130.........140.........150........
 
   125....130.........140.........150........ .160.........170.........180.........190.........200..
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Query Sequence  HGVIQHINHAILDEIPMIVEEGLSSFKLYLTYQY. . KLNDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLT
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Template Sequence  AAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHI. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S


T

TTSTTGGG

TT

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   159160.........170.........180.........190.........200.........210.........
 
   203......210.........220.........230.........240.. .......250.........260...... ...270.
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Query Sequence  APRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHLSN. . . . . . . . GLGLDYLRLARANHQPVWVETCPQ. . . YLLLD
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Template Sequence  . . . . . . . RNEADGVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTILI
Template Known Secondary structure  .......S
SSTT

TT



SGGGTTTT


S
S


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   220.........230.........240.........250.........260.........270.........280.........290..
 
   272.......280.........290.... .....300.........310.........320
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Query Sequence  ERSYDTEDGMKFILSPPLRNVRE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QDKLWCGISDGAIDVVATDHCTFSMA
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Template Sequence  PERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDAR
Template Known Secondary structure  GGGTTTSS

SS
GGGTT
BTS

S



STT




TT
SS
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   293......300.........310.........320.........330.........340.........350.........360.........370..
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  QRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQ
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Template Sequence  PHPRLWGSFTRVLGRYVR. . . . . . . . . . . . . . EARLMTLEQAVARMTALPARVFGFAE. RGVLQPGAWADVVVFDPDTVA
Template Known Secondary structure 

T



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T
SS
TT
TT.
SS

TTSB


TTT
B
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   373......380.........390 .........400.........410...... ...420.........430.......
 
   401........410.........420.........430.........440.........450..
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Query Sequence  QIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRFLR
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Template Sequence  D. . . . . . . . . . RATWDEPTLASVGIAGVLVNGAEVFPQPPADGRP. . GQVLR
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SSSTT


BSTTSS

SSS

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B

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   438 .440.........450.........460.........470.. .....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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