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Job DescriptionQ46806
Confidence100.00%DateThu Jan 5 12:34:31 GMT 2012
Rank38Aligned Residues358
% Identity17%Templatec2r8cB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:putative amidohydrolase; PDBTitle: crystal structure of uncharacterized protein eaj56179
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10..... ....20.........30.........40.........50.........60.........70...
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Query Sequence  VLIKNGTVVNADG. . . QAKQDLLIESGIVRQLGNNISPQLPYEEIDATGCYVFPGGVDVHTHFNIDVGIARSCD. . . . . .
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Template Sequence  FLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVL
Template Known Secondary structure  SSTTS
TTSS




SS
TT


TT

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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   74.....80.........90.........100......... 110.........120....
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Query Sequence  . . . DFFTGTRAAACGGTTTIIDHMGFGPNGCRLRHQLEV. . . . . . . . . . . . . . . . . . . . . . . . . . YRGYAAHKAVIDYSF
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Template Conservation              
  
 
                  
                                           
Template Sequence  VTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPGCCVRVGA
Template Known Secondary structure  TT
SS

TTSS




S
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   125....130.........140.........150.... .....160.........170.........180.........190......
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Query Sequence  HGVIQHINHAILDEIPMIVEEGLSSFKLYL. . . . . . . . TYQYKLNDDEVLQALRRLHESGALTTVHPENDAAIASKRAEF
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Template Sequence  LGRVADGVDEVRRAVREELQMGADQIKIMASGGVPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCG
Template Known Secondary structure 


STT
SS
B






SSSB
S
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STT
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  IAAGLTAPRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYD
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Template Sequence  VRTIEHGNLIDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ETARLVAEHGAYVVPTLVTYDAL. . . ASEG
Template Known Secondary structure 
S
TT

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   247..250........ .260.........270.........280. ....
 
   277..280........ .290.........300.........310.........320.........330.........340.........350....
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Query Sequence  TEDGMKFILSPP. . LRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMT
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Template Sequence  EKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSD. . . . . . . . . . . . . . . . . . . . . . . . EFRILA
Template Known Secondary structure  GGGT

TTSSTTTTTT







GGGGGGTT........................T
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   286...290.........300.........310.........320.........330..... ....340.
 
   355....360.........370.........380.........390.........400.........410.........420.........430....
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Query Sequence  GRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGET
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Template Sequence  EVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGE. . . . . . . . . . . . . HIPLVMKDGRL
Template Known Secondary structure  TTS
TTTT
BTTBSS

TTSB

SS
TTT
GGGS
SSST.............T

TT
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   342.......350.........360.........370.........380.........390....... ..400........
 
   435...
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Query Sequence  IFCD
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Template Conservation 
   
Template Sequence  FVNE
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   409410..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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