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Job DescriptionQ46806
Confidence100.00%DateThu Jan 5 12:34:31 GMT 2012
Rank33Aligned Residues374
% Identity10%Templatec2i9uA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cytosine/guanine deaminase related protein; PDBTitle: crystal structure of guanine deaminase from c. acetobutylicum with2 bound guanine in the active site
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10..... ....20.........30....... ..40.........50.........60.........70....
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Query Sequence  VLIKNGTVVNADG. . . . . QAKQDLLIESGIVRQLGNNISP. QLPYEEIDATGCYVFPGGVDVHTHFNIDVGIARSCDD. .
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Template Sequence  KIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHASQYKNLGIGMDKEL
Template Known Secondary structure  TTTTSS

GGGTTS

GGGGGGTT


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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   75....80.........90.........100.........110.........120.........130
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . FFTGTRAAACGGTTTIIDHMGFGPNGCRLRHQLEVYRGYAAHKAVIDYSFHGVIQH
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Template Sequence  LPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYL
Template Known Secondary structure  TGGGSTT

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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   131........140... ......150.........160.........170.........180.........190.........200...
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Query Sequence  INHAILDEIPMIV. . . . . . . EEGLSSFKLYLTYQYKLNDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTA
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Template Sequence  TENYITSLNDTEEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNF.
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GGG

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   171........180.........190.........200.........210.........220.........230.........240.........
 
   204.....210.........220.........230.........240.........250.........260.........270....... ..280.
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Query Sequence  PRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYDT. . EDGM
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNV
Template Known Secondary structure  ...........................................TT
SSSS


S

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   250.........260.........270.........280......
 
   282..... ..290.........300.........310.........320.........330.........340.........350.........
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Query Sequence  KFILSP. . PLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMTGRITP
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Template Sequence  TIVHCPTSNFNLGSGMMPVRKYLNLGINVVLGSDISAGHTCSLFKVIAY. . . . . . . . . . AIQNSKIKWQESGKKDMFLST
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   287..290.........300.........310.........320.........330..... ....340.........350......
 
   360.........370.........380.........390.........400.........410.........420.........430......
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Query Sequence  ERFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIF
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Template Sequence  SEAFYMATKKGGSFFG. . . KVGSFEEGYDFDALVINDS. NLYPEDYDLTERLERFIYLGD. . DRNIMKRYVCGNEIF
Template Known Secondary structure  TTTTS...S
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STT
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T.TS
GGGS


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   357..360.........370.. .......380.........390. ........400.........410.. .......420.......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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