Job Description Q46806 Confidence 100.00% Date Thu Jan 5 12:34:31 GMT 2012 Rank 24 Aligned Residues 364 % Identity 16% Template c1p1mA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm0936; PDBTitle: structure of thermotoga maritima amidohydrolase tm09362 bound to ni and methionine Resolution 1.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure															.	.																																																											.	.	.	.	.	.	.
Query SS confidence															.	.																																																											.	.	.	.	.	.	.
Query Sequence		V	L	I	K	N	G	T	V	V	N	A	D	G	.	.	Q	A	K	Q	D	L	L	I	E	S	G	I	V	R	Q	L	G	N	N	I	S	P	Q	L	P	Y	E	E	I	D	A	T	G	C	Y	V	F	P	G	G	V	D	V	H	T	H	F	N	I	D	V	G	I	A	R	S	C	D	.	.	.	.	.	.	.
Query Conservation															.	.																																																											.	.	.	.	.	.	.
Alig confidence															.	.																			.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		M	I	I	G	N	C	L	I	L	K	D	F	S	S	E	P	F	W	G	A	V	E	I	E	N	G	T	I	K	R	V	L	Q	.	.	.	.	G	E	V	K	V	D	L	D	L	S	G	K	L	V	M	P	A	L	F	N	T	H	T	H	A	P	M	T	L	L	R	G	V	A	E	D	L	S	F	E	E	W	L
Template Known Secondary structure												S	T	T	S											T	T								.	.	.	.	S	S				S				T	T														G	G	G	G	G	G	T	T	S	S		S
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
																				74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	F	T	G	T	R	A	A	A	C	G	G	T	T	T	I	I	D	H	M	G	F	G	P	N	G	C	R	L	R	H	Q	L	E	V	Y	R	G	Y	A	A	H	K	A	V	I	D	Y	S	F	H	G	V	I	Q	H	I	N	H	A	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																																										.	.	.
Template Sequence		F	S	K	V	L	P	I	E	D	R	L	T	E	K	M	A	Y	Y	G	T	I	L	A	Q	M	E	M	A	R	H	G	I	A	G	F	V	D	M	Y	F	.	.	.	H	E	E	W	I	A	K	A	V	R	D	F	G	M	R	A	L	L	T	R	G	L	V	D	S	N	G	D	D	G	G	R	L	E	E	N	L
Template Known Secondary structure			T	T						T	T																			T	T	T									S	.	.	.	S																								B	T	T	B		T	T
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	I	P	M	I	V	E	E	G	L	S	S	F	K	L	Y	L	T	Y	Q	Y	K	L	N	D	D	E	V	L	Q	A	L	R	R	L	H	E	S	G	A	L	T	T	V	H	P	E	N	D	A	A	I	A	S	K	R	A	E	F	I	A	A	G	L	T	A	P	R	Y	H	A	L	S	R	P	L	E	C
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	Y	N	E	W	N	G	F	E	G	R	I	F	V	G	F	G	P	H	S	P	Y	L	C	S	E	E	Y	L	K	R	V	F	D	T	A	K	S	L	N	A	P	V	T	I	H	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	G	G	G	T										T	T	T	S															T	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.			.	290	.
Predicted Secondary structure																																																																.	.												.	.
Query SS confidence																																																																.	.												.	.
Query Sequence		E	A	E	A	I	A	R	M	I	N	L	A	Q	I	A	G	N	A	P	L	Y	I	V	H	L	S	N	G	L	G	L	D	Y	L	R	L	A	R	A	N	H	Q	P	V	W	V	E	T	C	P	Q	Y	L	L	L	D	E	R	S	Y	D	T	.	.	E	D	G	M	K	F	I	L	S	P	P	.	.	L	R	N
Query Conservation																																																																.	.												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	S	K	E	E	Y	D	L	E	D	I	L	N	I	G	L	K	E	V	K	T	I	A	A	H	C	V	H	L	P	E	R	Y	F	G	V	L	K	D	I	P	F	F	V	S	H	N	P	A	S	N	L	K	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T					T					T	T	T	T	T	T	S								T	T			G	G	G	T	T	T	T	T	T	S	S													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																											203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	Q	D	K	L	W	C	G	I	S	D	G	A	I	D	V	V	A	T	D	H	C	T	F	S	M	A	Q	R	L	Q	I	S	K	G	D	F	S	R	C	P	N	G	L	P	G	V	E	N	R	M	Q	L	L	F	S	S	G	V	M	T	G	R	I	T	P	E	R	F	V	E	L	T	S	A	M	P	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	N	G	I	A	P	V	Q	R	M	I	E	H	G	M	K	V	T	L	G	T	D	G	A	A	S	N	N	S	L	N	L	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	R	L	A	S	L	L	Q	K	A	Q	N	P	R	N	L	D	V	N	T	C	L	K	M	V	T	Y	D	G	A
Template Known Secondary structure		T												T	T										T	T	T	T	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T		T	T	S	S										T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	F	G	L	W	P	Q	K	G	L	L	A	P	G	S	D	G	D	V	V	I	I	D	P	R	Q	S	Q	Q	I	Q	H	R	H	L	H	D	N	A	D	Y	S	P	W	E	G	F	T	C	Q	G	A	I	V	R	T	L	S	R	G	E	T	I	F	C	D	G	T	F	T	G	K	A	G	R	G	R	F	L
Query Conservation
Alig confidence									.	.																																				.	.	.	.	.	.																										.
Template Conservation									.	.																																				.	.	.	.	.	.																										.
Template Sequence		Q	A	M	G	F	K	S	.	.	G	K	I	E	E	G	W	N	A	D	L	V	V	I	D	L	D	L	P	E	M	F	P	V	Q	N	I	K	N	H	L	V	H	A	F	.	.	.	.	.	.	S	G	E	V	F	A	T	M	V	A	G	K	W	I	Y	F	D	G	E	Y	P	T	I	D	S	.	E	E	V	K
Template Known Secondary structure					T		S		.	.	S	S			T	T	S	B										S	G	G	G		S	G	G	G								T		.	.	.	.	.	.		S			S					T	T						T	T	B		T	T	S			.
Template Predicted Secondary structure									.	.																																				.	.	.	.	.	.																										.
Template SS confidence
		323	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.
		452	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.