Return to main results Retrieve Phyre Job Id

Job DescriptionQ46806
Confidence100.00%DateThu Jan 5 12:34:31 GMT 2012
Rank8Aligned Residues449
% Identity29%Templatec1gkrA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:non-atp dependent l-selective hydantoinase; PDBTitle: l-hydantoinase (dihydropyrimidinase) from arthrobacter2 aurescens
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEIDATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTGTR
Query Conservation 

 

 
  
          
 
 

 
  

          


  
  
 




 
 
                   
Alig confidence 





































































.








Template Conservation   



 
  
          
 
  
 
  

          


  
  
 




 
 
         .         
Template Sequence  FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHIIDMDLKNR. YGRFELDSE
Template Known Secondary structure  TTTTS

TT


TT




GGGTTT.S

Template Predicted Secondary structure 








































.
Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70. ........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  AAACGGTTTIIDHMGFGPNGCRLRHQLEVYRGYAAHKAVIDYSFHGVIQHINHAILDEIPMIVEEGLSSFKLYLTYQYKL
Query Conservation       
 
                                                         
              
Alig confidence 















































































Template Conservation       
 
                                                     
                  
Template Sequence  SAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFSMMAASVPGMFDAV
Template Known Secondary structure  T
S
SSS
S
S
SSB



TT
TT

B

BSS
SBTTTB
B
Template Predicted Secondary structure 




































Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  NDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAEAIARMINLAQIAGNAPLYIVHL
Query Conservation                                                                                  
Alig confidence 






































































.







Template Conservation                                                                    
    .        
Template Sequence  SDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAG. CRLIVLHV
Template Known Secondary structure 
T
B


TT

SS

.



Template Predicted Secondary structure 
























.



Template SS confidence 















































































   162.......170.........180.........190.........200.........210.........220.........230.. .......240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  SNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYDTEDGMKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMA
Query Conservation                 
                                         
      
     


       
Alig confidence 





































.







































.
Template Conservation          
      
                      .       
                 
     


      .
Template Sequence  SNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI. GPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPV.
Template Known Secondary structure 
STT


S

GGG.GGGG

SS



T








G.
Template Predicted Secondary structure 













.

















.
Template SS confidence 















































































   241........250.........260.........270........ .280.........290.........300.........310........
 
   321........330.........340.........350.........360.........370.........380.........390.........400
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  QRLQISKGDFSRCPNGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVVIIDPRQSQ
Query Conservation                 
                    

  


   
   
  

     


  

 






     
Alig confidence 















































































Template Conservation                 
                    

  


   
   
  


    
 
  

 






 
   
Template Sequence  EDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDT
Template Known Secondary structure  GGTGGGGT
GGGS


B

TTTTGGGTSS
TT
TTTSSS

TTSB

S


Template Predicted Secondary structure 


































Template SS confidence 















































































   319320.........330.........340.........350.........360.........370.........380.........390........
 
   401........410.........420.........430.........440.........450...
Predicted Secondary structure 






















Query SS confidence 




















































Query Sequence  QIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRFLRR
Query Conservation                
         
  


 
  
   
        
     
Alig confidence 




















































Template Conservation   
                      
  


 
  
   
        
  
  
Template Sequence  KVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR
Template Known Secondary structure 

GGG
SSS



TTTT


TTTT
S
TT


B


Template Predicted Secondary structure 

























Template SS confidence 




















































   399400.........410.........420.........430.........440.........450.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions